View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_low_7 (Length: 401)
Name: NF19185_low_7
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 36 - 401
Target Start/End: Original strand, 32955629 - 32955982
Alignment:
| Q |
36 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
135 |
Q |
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| T |
32955629 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
32955728 |
T |
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| Q |
136 |
ctgttctattatcttaggaatattaagcttatgtcgtcatcatcatcaatatcatcgtaacttctaattccaatgcttcatcttgtgtaagcgtgagcaa |
235 |
Q |
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| T |
32955729 |
ctgttctattaacgtaggaatattaagcttatgtcatcatcat---------------aacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
32955813 |
T |
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| Q |
236 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955814 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
32955913 |
T |
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| Q |
336 |
ctgtggttgagagtaccatgaa---ttgttgttgttgttactgtagaagtttcctgactccattatgcc |
401 |
Q |
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| T |
32955914 |
ctgtggttgtgagtaccatgaattgttgttgttgttgttactgtagaagtttcctgactccattatgcc |
32955982 |
T |
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