View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_low_8 (Length: 391)
Name: NF19185_low_8
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 382
Target Start/End: Complemental strand, 10604998 - 10604619
Alignment:
| Q |
5 |
atgttgagactctagttggtggaggccaaacccttcactacacaactaataacacatgttttataatatatagttttgcatgtgaaaaaccattatttgg |
104 |
Q |
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| T |
10604998 |
atgttgagactctagttggttgaggccaaacccttcactacacaactaataacacatgttttataatatatagttttgcatgtgaaaaaccattatttgg |
10604899 |
T |
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| Q |
105 |
acaa--taattattttaaaagaaacttatttgtctaaattaatcatgctataaaatatgaaacaaaagtacaccttttctatcattctttttctatgcta |
202 |
Q |
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| T |
10604898 |
acaaaataattattttaaaagaaacttatttgtctaaattaatcatgctataaaatatcaaacaaaagtacatcttttctatcattctttttctatgcta |
10604799 |
T |
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| Q |
203 |
gctataatattttaatttaatgtttattgatcatcaacttattatgttttgttgcatcttcttttacagaaaaattaggccaaagatgacactccctatc |
302 |
Q |
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| T |
10604798 |
gctataatattttaatttaatgtttattgatcatcaacttatactgttttgttgcatcttcttttacagaaaaattaggccaaagatgacactccctatc |
10604699 |
T |
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| Q |
303 |
tttttgaggctagcggttcttggtttccttgagtaaggctcttcaattcctctcctccatttaattatcactatattctt |
382 |
Q |
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| T |
10604698 |
tttttgaggctagcggttcttggtttccttgagtaaggctcttcaattcctctcctccatttaattatcactatattctt |
10604619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 32604369 - 32604288
Alignment:
| Q |
265 |
tttacagaaaaattaggccaaagatgacactccctatctttttgaggctagcggttcttggtttccttgagtaaggctcttc |
346 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||| ||||| ||| || |||||||||||||||||||||||||| |
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| T |
32604369 |
tttacagaaaaacaaggccaaagatgactctccccatcttcctgaggatagtggcacttggtttccttgagtaaggctcttc |
32604288 |
T |
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