View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19186_low_2 (Length: 423)
Name: NF19186_low_2
Description: NF19186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19186_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 45803478 - 45803873
Alignment:
| Q |
18 |
ggagcaacaaggacaccctgacattatagtaaaccaaatgccnnnnnnnnnnnnntggtttagtagtagcagatttagtctaaagcctgttttgtataga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45803478 |
ggagcaacaaggacaccctgacattatagtaaaccaaatgccaaaaaataaaaaatggtttagtagtagcagatttagtctaaagcctgtttcgtataga |
45803577 |
T |
|
| Q |
118 |
gtatgaaaaactgaatggacaacagaatagaatatatagaaaagagaacataattaagttcaagtagaccatgtatttgttctttatgtataagtctcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45803578 |
atatgaaaaactgaatggacaacagaa-----tatatagaaaagagaacataattaagttcaagtagaccatgtatttgttctttatgtataagtctcac |
45803672 |
T |
|
| Q |
218 |
cccttgctcaccatgctggccttctcacagaatgcagataatgctgcaaccgtatctaatttgattcgcggcacgtacacgacacttttcatgccaaatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45803673 |
cccttgctcaccatgctggccttctcacagaatgcagataatgctgcaaccgtatctaatttgattcgcggcacgtacacgacacttttcatgccaaatg |
45803772 |
T |
|
| Q |
318 |
ctgttgcctatatagtgaagaagaatcaatcaatggtcaagtattatcataacacaacataatggttcaaatattatctatgagtttcccagtataatct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
45803773 |
ctgttgcctatatagtgaagaagaatcaatcaatggtcaagtattatcataacacaacataatggttcaaatattatctatgagtttcccaatagaatct |
45803872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University