View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19186_low_3 (Length: 367)
Name: NF19186_low_3
Description: NF19186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19186_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 114 - 367
Target Start/End: Complemental strand, 6995817 - 6995564
Alignment:
| Q |
114 |
gtagaaaaaagagagaagaacatgttggtggcggaattgagtggttcgaacctcgatattcctgaggagttgctgcaagttctaccatccgatcctttcg |
213 |
Q |
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| T |
6995817 |
gtagaaaaaagagagaagaacatgttggtggcggaattgagtggttcgaacctcgatattcctgaggagttgctgcaagttctaccatccgatcctttcg |
6995718 |
T |
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| Q |
214 |
agcaactcgatgtggctcgcaaaatcacctccattgccctttcaacacgtgtcaacacgctccaatcagaagtttctgctctacgtgatgagctcgtcaa |
313 |
Q |
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| T |
6995717 |
agcaactcgatgtggctcgcaaaatcacctccattgccctttcaacacgtgtcaacacgctccaatcagaagtttctgctctacgtgatgagctcgtcaa |
6995618 |
T |
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| Q |
314 |
gaaagacgagctcatcgcggagctggaagctcagggagagcctctccacgctgc |
367 |
Q |
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| T |
6995617 |
gaaagacgagctcatcgcggagctggaagctcagggagagcctctccacgctgc |
6995564 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 49085195 - 49085276
Alignment:
| Q |
187 |
tgcaagttctaccatccgatcctttcgagcaactcgatgtggctcgcaaaatcacctccattgccctttcaacacgtgtcaa |
268 |
Q |
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| T |
49085195 |
tgcaagtactaccgtcagatccatttgaacaactcgatgtagcgcgcaagatcacatccattgctctatcgacacgtgtcaa |
49085276 |
T |
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