View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19186_low_5 (Length: 298)

Name: NF19186_low_5
Description: NF19186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19186_low_5
NF19186_low_5
[»] chr8 (6 HSPs)
chr8 (124-269)||(8750021-8750166)
chr8 (125-269)||(24963054-24963198)
chr8 (125-269)||(38112485-38112629)
chr8 (125-246)||(41648542-41648661)
chr8 (144-238)||(42787411-42787506)
chr8 (178-223)||(3776344-3776389)
[»] chr7 (2 HSPs)
chr7 (125-269)||(40404099-40404243)
chr7 (178-225)||(43353791-43353838)
[»] chr5 (4 HSPs)
chr5 (1-124)||(31961334-31961457)
chr5 (184-255)||(11999770-11999841)
chr5 (178-241)||(9617999-9618062)
chr5 (173-217)||(31858909-31858953)
[»] chr1 (4 HSPs)
chr1 (178-241)||(5829968-5830031)
chr1 (178-241)||(42434144-42434207)
chr1 (164-223)||(29300648-29300707)
chr1 (178-223)||(30961245-30961290)
[»] chr3 (1 HSPs)
chr3 (178-218)||(30129803-30129843)
[»] chr2 (1 HSPs)
chr2 (178-218)||(6310243-6310283)
[»] chr4 (3 HSPs)
chr4 (178-225)||(1034505-1034552)
chr4 (178-223)||(19876973-19877018)
chr4 (178-223)||(49822294-49822339)
[»] chr6 (2 HSPs)
chr6 (178-224)||(4120779-4120825)
chr6 (178-223)||(748159-748204)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 8750166 - 8750021
Alignment:
Q  124 tgagtgatgatacacaaacctccatagttggcacacaccattctacacacttccatgtggcatttttaattaattacattaagggtaattttgtccattc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8750166 tgagtgatgatacacaaacctccatagttggcacacaccattctacacactcccatgtggcatttttaattaattacattaagggtaattttgtctattc 8750067  T
Q  224 aatctctcttccttcacctatctttaacctcacgcgactttcttca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8750066 aatctctcttccttcacctatctttaacctcacgcgactttcttca 8750021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 125 - 269
Target Start/End: Original strand, 24963054 - 24963198
Alignment:
Q  125 gagtgatgatacacaaacctccatagttggcacacaccattctacacacttccatgtggcatttttaattaattacattaagggtaattttgtccattca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24963054 gagtgatgatacacaaacctccatagttggcacacaccattctaaacactcccatgtggcatttttaattaattacattaagggtaattttgtccattca 24963153  T
Q  225 atctctcttccttcacctatctttaacctcacgcgactttcttca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24963154 atctctcttccttcacctatctttaacctcacgcgactttcttca 24963198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 125 - 269
Target Start/End: Original strand, 38112485 - 38112629
Alignment:
Q  125 gagtgatgatacacaaacctccatagttggcacacaccattctacacacttccatgtggcatttttaattaattacattaagggtaattttgtccattca 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38112485 gagtgatgatacacaaacctccatagttggcacacaccattctacacactctcatgtggcatttttaattaattacattaagggtaattttgtccattca 38112584  T
Q  225 atctctcttccttcacctatctttaacctcacgcgactttcttca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38112585 atctctcttccttcacctatctttaacctcacgcgactttcttca 38112629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 41648661 - 41648542
Alignment:
Q  125 gagtgatgatacacaaacctccatagttggcacacaccattctacacacttccatgtggcatttttaattaattacattaagggtaattttgtccattca 224  Q
    ||||||||||| |||||| ||||||  ||||| ||| | ||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||||||    
T  41648661 gagtgatgatatacaaacatccatacatggcatacatccttctacacactcccatgtggcatttttaaataattttattaagggtaattttgtccattca 41648562  T
Q  225 atctctcttccttcacctatct 246  Q
      ||||||||||||||| ||||    
T  41648561 --ctctcttccttcacccatct 41648542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 42787506 - 42787411
Alignment:
Q  144 tccatagttggcacacaccattctacacac-ttccatgtggcatttttaattaattacattaagggtaattttgtccattcaatctctcttccttc 238  Q
    ||||||| ||||| | ||| |||||||||| || ||||||||||||||||||||||| ||| | |||||||||||||||||| | |||||||||||    
T  42787506 tccataggtggcatagacccttctacacacctttcatgtggcatttttaattaattatattgaaggtaattttgtccattcactttctcttccttc 42787411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 3776344 - 3776389
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattc 223  Q
    ||||||||||||| ||||||| || |||||||||||||||| ||||    
T  3776344 atgtggcattttttattaatttcagtaagggtaattttgtcaattc 3776389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 125 - 269
Target Start/End: Complemental strand, 40404243 - 40404099
Alignment:
Q  125 gagtgatgatacacaaacctccatagttggcacacaccattctacacacttccatgtggcatttttaattaattacattaagggtaattttgtccattca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40404243 gagtgatgatacacaaacctccatagttggcacacaccattctacacactcccatgtggcatttttaattaattacattaagggtaattttgtcaattca 40404144  T
Q  225 atctctcttccttcacctatctttaacctcacgcgactttcttca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40404143 atctctcttccttcacctatctttaacctcacgcgactttcttca 40404099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 43353791 - 43353838
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattcaa 225  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||    
T  43353791 atgtggcatttttaattaatttttttaagggtaattttgtccattcaa 43353838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 31961334 - 31961457
Alignment:
Q  1 ctaaattgtgtagggtatgaaaaaatcatggtgaaatcgaagtgtcattactctcaatttgaacnnnnnnntggaatatgaaaacttaagatgatcatgt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||    
T  31961334 ctaaattgtgtaggttatgaaaaaatcatggtgaaatcgaagtgtcattactcacaatttgaacaaaaaaatggaatatgaaaacttaagatgatcatgt 31961433  T
Q  101 ctacttgagctaatcctttttctt 124  Q
    ||||||||||||||||||||||||    
T  31961434 ctacttgagctaatcctttttctt 31961457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 11999770 - 11999841
Alignment:
Q  184 catttttaattaattacattaagggtaattttgtccattcaatctctcttccttcacctatctttaacctca 255  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||  ||||| ||||||    
T  11999770 catttttaattaattacattgagggtaattttgtctattcactctctcttccttcccccgtctttgacctca 11999841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 9617999 - 9618062
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattcaatctctcttccttcacc 241  Q
    ||||||||||||| ||||||| |||||||||||||| |||| |||| | |||||||||||||||    
T  9617999 atgtggcattttttattaatttcattaagggtaattctgtctattccaactctcttccttcacc 9618062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 31858909 - 31858953
Alignment:
Q  173 cttccatgtggcatttttaattaattacattaagggtaattttgt 217  Q
    |||| |||||||||| || |||||||| |||||||||||||||||    
T  31858909 cttctatgtggcattgtttattaattatattaagggtaattttgt 31858953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 5829968 - 5830031
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattcaatctctcttccttcacc 241  Q
    ||||||||||||| ||||||| |||||||||||||| |||| |||| | |||||||||||||||    
T  5829968 atgtggcattttttattaatttcattaagggtaattctgtctattccaactctcttccttcacc 5830031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 42434144 - 42434207
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattcaatctctcttccttcacc 241  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||   || ||||||||||||    
T  42434144 atgtggcattttttattaatttcagtaagggtaattttgtccattcctactttcttccttcacc 42434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 29300648 - 29300707
Alignment:
Q  164 ttctacacacttccatgtggcatttttaattaattacattaagggtaattttgtccattc 223  Q
    |||||||| | |||||||||||||||||| |||||  |||||||||| |||| |||||||    
T  29300648 ttctacacccctccatgtggcatttttaaataattttattaagggtagttttatccattc 29300707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 30961245 - 30961290
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattc 223  Q
    |||||||||||||||||||||  || ||||||||||||||| ||||    
T  30961245 atgtggcatttttaattaattttatcaagggtaattttgtcaattc 30961290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 30129843 - 30129803
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtc 218  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  30129843 atgtggcatttttaattaattttattaagggtaattttgtc 30129803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 6310283 - 6310243
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtc 218  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  6310283 atgtggcatttttaattaattttattaagggtaattttgtc 6310243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 1034505 - 1034552
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattcaa 225  Q
    |||||||||||||||||| ||   ||||||||||||||||||||||||    
T  1034505 atgtggcatttttaattattttttttaagggtaattttgtccattcaa 1034552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 19876973 - 19877018
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattc 223  Q
    |||||||||||||||||||||  ||||||| || ||||||||||||    
T  19876973 atgtggcatttttaattaattttattaaggatagttttgtccattc 19877018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 49822294 - 49822339
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattc 223  Q
    |||||||||||||||||||||  ||||||| || ||||||||||||    
T  49822294 atgtggcatttttaattaattttattaaggatagttttgtccattc 49822339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 4120779 - 4120825
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattca 224  Q
    |||||| |||||| ||||||| ||||||||||||||||||| |||||    
T  4120779 atgtggtattttttattaatttcattaagggtaattttgtcaattca 4120825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 748204 - 748159
Alignment:
Q  178 atgtggcatttttaattaattacattaagggtaattttgtccattc 223  Q
    |||||||||||||||||||||  || ||||||||||||||| ||||    
T  748204 atgtggcatttttaattaattttatcaagggtaattttgtcaattc 748159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University