View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19187_high_2 (Length: 628)

Name: NF19187_high_2
Description: NF19187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19187_high_2
NF19187_high_2
[»] chr6 (11 HSPs)
chr6 (1-610)||(34770871-34771480)
chr6 (434-540)||(34795615-34795721)
chr6 (434-540)||(34780767-34780873)
chr6 (1-149)||(34781220-34781365)
chr6 (541-595)||(34780904-34780958)
chr6 (541-595)||(34795752-34795806)
chr6 (1-53)||(11549504-11549556)
chr6 (185-253)||(34795285-34795353)
chr6 (187-253)||(34780505-34780570)
chr6 (269-363)||(34795418-34795512)
chr6 (96-143)||(34777675-34777720)


Alignment Details
Target: chr6 (Bit Score: 602; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 610
Target Start/End: Original strand, 34770871 - 34771480
Alignment:
Q  1 tactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770871 tactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatg 34770970  T
Q  101 gaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaataataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770971 gaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaataataa 34771070  T
Q  201 aaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagtaactc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771071 aaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagtaactc 34771170  T
Q  301 taattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattcattat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771171 taattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattcattat 34771270  T
Q  401 ttatttacttttgtttctctaataccattagaaaatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttacca 500  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34771271 ttatttacttttgtttctctaataccattagaaaatgaaagaaagagaatctcgcttcctacttctctctagttttcgtgtctctaattgatctttacca 34771370  T
Q  501 caacaaaaccaagccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttac 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771371 caacaaaaccaagccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttac 34771470  T
Q  601 ttccctctct 610  Q
    ||||||||||    
T  34771471 ttccctctct 34771480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 434 - 540
Target Start/End: Original strand, 34795615 - 34795721
Alignment:
Q  434 aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca 533  Q
    ||||||||| |||||||||| |||||||||||  ||||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34795615 aatgaaagaaagagaatctcacttcctacttccctctagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca 34795714  T
Q  534 tgtcacc 540  Q
    |||||||    
T  34795715 tgtcacc 34795721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 434 - 540
Target Start/End: Original strand, 34780767 - 34780873
Alignment:
Q  434 aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca 533  Q
    ||||||||| |||||||||| |||||||||||  | ||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34780767 aatgaaagaaagagaatctcacttcctacttccctttagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca 34780866  T
Q  534 tgtcacc 540  Q
    |||||||    
T  34780867 tgtcacc 34780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 34781220 - 34781365
Alignment:
Q  1 tactttttcaaataaaa-gatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgat 99  Q
    ||||| ||||||||||| ||| || |||||||||||||||  ||||||||||||||||||  |  |||| |||||||||||||||||||| ||||| |||    
T  34781220 tacttgttcaaataaaaagattagagataaaatagtaattttaaaattaagatgtttcat--ggaggaaagaaaaataataagagatgatggtatacgat 34781317  T
Q  100 ggaatgcattctactatataatccattttattccattcaatttttacaaa 149  Q
    | |||||||| || ||||  ||||||||||||||||||||||||||||||    
T  34781318 gaaatgcattatattata--atccattttattccattcaatttttacaaa 34781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 34780904 - 34780958
Alignment:
Q  541 atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact 595  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34780904 atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact 34780958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 34795752 - 34795806
Alignment:
Q  541 atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact 595  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34795752 atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact 34795806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11549504 - 11549556
Alignment:
Q  1 tactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatg 53  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11549504 tactttttcaaataaaagatcagggatagaatagtaattacaaaattaagatg 11549556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 34795285 - 34795353
Alignment:
Q  185 ataataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 253  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| ||||    
T  34795285 ataataacaataataaatagagccaacgaagtttgactcaattgataaaaaataacaaaaaatttaact 34795353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 34780505 - 34780570
Alignment:
Q  187 aataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 253  Q
    |||||||| ||||||||||  || ||||||| || ||||||||||||||||||||||||||||||||    
T  34780505 aataacaaaaataaaaagaatta-cgaagttcgactcaattgataaaaaataactaaaaattcaact 34780570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 34795418 - 34795512
Alignment:
Q  269 aatacatctttagagagtctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattg 363  Q
    ||||| ||||||||||| ||   | ||| |||||| || ||||||||||||||||||| |||| ||||||| |||  ||||||||||||||||||    
T  34795418 aatacctctttagagagactataaggtagctctaactcaattaagttgcgaaatccgactcatttaaacttttttgtgccaaataagtagcattg 34795512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 34777675 - 34777720
Alignment:
Q  96 tgatggaatgcattctactatataatccattttattccattcaatttt 143  Q
    ||||||||| |||||||||||   ||||||||||||||||||||||||    
T  34777675 tgatggaatccattctactatc--atccattttattccattcaatttt 34777720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University