View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19187_low_1 (Length: 821)
Name: NF19187_low_1
Description: NF19187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19187_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 746; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 18 - 806
Target Start/End: Original strand, 52546628 - 52547414
Alignment:
| Q |
18 |
aggaacatggtacctgtccaaatccaaaacaaagtttccatgttatttaaattaaaccattcactattaaaaaataagatgtacaaaatcttaccatttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52546628 |
aggaacatggtacctgtccaaatccaaaacaaagtttccatgttattcaaattaaaccattcactattaaaaaataagatgtacaaaatcttgccatttt |
52546727 |
T |
|
| Q |
118 |
tgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataacaatcaccacatttaccgcgtgctatatatccaggcatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52546728 |
tgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataaaaatcaccacatttaccgcgtgctatatatccaggcatat |
52546827 |
T |
|
| Q |
218 |
ggcgtccaatgttttgactatttatccatacttgaccctttcccatactactcatatctagagctaatggatcatttcctgctggtgtcctaaaagttgt |
317 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52546828 |
ggcgtccaatgtttcgaccatttatccatacttgaccctttcccatactactcatatctagagctaatggatcatttcctgctggtgtcctaaaagctgt |
52546927 |
T |
|
| Q |
318 |
ctaatgacattgaagtacaaataatgattcagaatacattcagaggcaggtgatcacagatccatgtgacagaaataaaacatatgttgaaaatttaatc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52546928 |
ctaatgacattgaagtacaaataatgattcagaatacattcagaggcaggtgatcacagattcatgtgacagaaataaaacatatgttgaaaatttaatc |
52547027 |
T |
|
| Q |
418 |
ataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgggaagttttaaggtttc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547028 |
ataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgggaagttttaaggtttc |
52547127 |
T |
|
| Q |
518 |
acccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcattatttccgaaaagcgaaatcacatataaaaatgaatgataca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547128 |
acccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcattatttccgaaaagcgaaatcacatataaaaatgaatgataca |
52547227 |
T |
|
| Q |
618 |
catataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttcttagtgatgacacaagtaagtatcaacaacatttttcgatttt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52547228 |
catataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttcttagtgatg--acaagtaagtatcaacaacatttttcgatttt |
52547325 |
T |
|
| Q |
718 |
gaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaaccttgtaagaccatttctgttgtgacaagtctctg |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547326 |
gaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaaccttgtaagaccatttctgttgtgacaagtctctg |
52547414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 47536769 - 47536710
Alignment:
| Q |
99 |
tacaaaatcttaccatttctgagagggttgtccacaatttgtttgacattttgtctcggc |
158 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||| |||| || ||||||| ||||| |
|
|
| T |
47536769 |
tacaaacttttaccaattctgagagggttgtccacaatctgttcgatattttgtttcggc |
47536710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 296
Target Start/End: Complemental strand, 17129011 - 17128821
Alignment:
| Q |
106 |
tcttaccatttctgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataacaatcaccacatttaccgcgtgctatat |
205 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||| |||||| | || | ||||||||||||||| |||| ||||| ||||| || ||||||| |
|
|
| T |
17129011 |
tcttaccatttttgtgtgggttgtccacaatttgttctgcattttttatctgtgaaagttccggcataattacaactgccacaattaccacgagctatat |
17128912 |
T |
|
| Q |
206 |
atccaggcatatggcgtccaatgttttgactatttatccatacttgaccctttcccatactactcatatctagagctaatggatcatttcc |
296 |
Q |
| |
|
|| | ||| |||||| |||||| | |||| ||| | ||||| || |||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
17128911 |
atgccggccaatggcgaccaatgctctgaccattaacccatatttcaccctttcccatactactcatatctagagccaatggatcgtttcc |
17128821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 535
Target Start/End: Complemental strand, 17128727 - 17128594
Alignment:
| Q |
402 |
tgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgg |
501 |
Q |
| |
|
||||||||| | | || ||||||||||||||||||||||||| |||||| || ||| ||||||| ||||| ||| || |||||||||||| || |
|
|
| T |
17128727 |
tgttgaaaactcattcttaccttgtaccatgtcaaaggttgttttttagataaaaatgatccttgtgtccatttaacagaagaacttccacttgtggtat |
17128628 |
T |
|
| Q |
502 |
gaagttttaaggtttcacccttgagaccaatctg |
535 |
Q |
| |
|
|||| ||||||| |||||| || || |||||||| |
|
|
| T |
17128627 |
gaaggtttaaggattcacctttcagtccaatctg |
17128594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 293
Target Start/End: Complemental strand, 5233102 - 5232912
Alignment:
| Q |
103 |
aaatcttaccatttctgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataacaatcaccacatttaccgcgtgcta |
202 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||| ||||||| | | | ||||||| ||||||| ||| ||| |||| || || |||||| |
|
|
| T |
5233102 |
aaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttccagcataattacattcatcacaattgccatgtgcta |
5233003 |
T |
|
| Q |
203 |
tatatccaggcatatggcgtccaatgttttgactatttatccatacttgaccctttcccatactactcatatctagagctaatggatcatt |
293 |
Q |
| |
|
||||| ||||| ||| || |||||| ||||| |||||||||| || |||||||||||| |||||||||||||| || | ||||||||| |
|
|
| T |
5233002 |
tatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcccatgctactcatatctagtgccactggatcatt |
5232912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 5232788 - 5232740
Alignment:
| Q |
419 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgt |
467 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
5232788 |
taccttgtaccatgtcaaaggttgttttttagccaatgatgatccttgt |
5232740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University