View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19187_low_5 (Length: 238)
Name: NF19187_low_5
Description: NF19187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19187_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 34765170 - 34765358
Alignment:
| Q |
32 |
taaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgttcaaggtttgatgcattgaaagagt |
131 |
Q |
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| T |
34765170 |
taaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgttcaaggtttgatgcattgaaagagt |
34765269 |
T |
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| Q |
132 |
gagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctc |
220 |
Q |
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| T |
34765270 |
gagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctc |
34765358 |
T |
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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 6440662 - 6440469
Alignment:
| Q |
8 |
aagccaaacaaaaacatacaatagtaaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgtt |
107 |
Q |
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| T |
6440662 |
aagccaaacaaatacaaactatagaaaattaacctacttctaaaacccaattccaaaccaaaaatcaaatatcttcgaagggcacatta-caatagtgtt |
6440564 |
T |
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| Q |
108 |
caaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacat |
202 |
Q |
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| T |
6440563 |
caatacttgctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtggttaacgataatgaatttcacat |
6440469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 895426 - 895501
Alignment:
| Q |
104 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtg |
179 |
Q |
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| T |
895426 |
tgttcaagacttgttgcattgaaggagtaagaggagaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
895501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 905214 - 905139
Alignment:
| Q |
104 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtg |
179 |
Q |
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| T |
905214 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
905139 |
T |
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