View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19188_high_1 (Length: 404)
Name: NF19188_high_1
Description: NF19188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19188_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 386
Target Start/End: Original strand, 48657854 - 48658226
Alignment:
| Q |
14 |
gaagatgatgcggctattttagtacctggggatataatcagcataaagctaggagatatcattccagctgatgctcgcttgcttgaaggagaccctctca |
113 |
Q |
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| T |
48657854 |
gaagatgatgcggctattttagtacctggggatataatcagcataaagctaggagatatcattccagctgatgctcgcttgcttgaaggagaccctctca |
48657953 |
T |
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| Q |
114 |
aaattgaccaggcaagtcttcatttgttagacggaaatgaagaaaaattgtgttacaagtttcttctcattaatgttttcactatatattttttcatgac |
213 |
Q |
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| T |
48657954 |
aaattgaccaggcaagtcttcatttgttagacggaaatgaagaaaaattgtgttacaagtttcttctcattaatgttttcactatatattttttcatgac |
48658053 |
T |
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| Q |
214 |
ataaactgtatataactgatcaagaatcaggacggagttcatatgatgacttggttttgattcatgcagtcagcccttactggagagtccctacctgtca |
313 |
Q |
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| T |
48658054 |
ataaactgtatataactgatcaagaatcaggacggagttcatatgatgacttggttttgattcatgcagtcagcccttactggagagtccctacctgtca |
48658153 |
T |
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| Q |
314 |
cgnnnnnnnctggtgatgaggtcttttcaggttcaacgtgtaaacacggagagattgaagctgtagtgatagc |
386 |
Q |
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| T |
48658154 |
cgaaaaaaactggtgacgaggtcttttcaggttcaacgtgtaaacacggagagattgaagctgtagtgatagc |
48658226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 1460442 - 1460509
Alignment:
| Q |
20 |
gatgcggctattttagtacctggggatataatcagcataaagctaggagatatcattccagctgatgc |
87 |
Q |
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| T |
1460442 |
gatgctgcaattttagtaccaggagacataatcagcattaagttaggagacatcatcccagctgatgc |
1460509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 1498894 - 1498827
Alignment:
| Q |
20 |
gatgcggctattttagtacctggggatataatcagcataaagctaggagatatcattccagctgatgc |
87 |
Q |
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| T |
1498894 |
gatgctgcaattttagtaccaggagacataatcagcatcaagttaggagatattgttccagctgatgc |
1498827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 50274252 - 50274338
Alignment:
| Q |
13 |
tgaagatgatgcggctattttagtacctggggatataatcagcataaagctaggagatatcattccagctgatgctcgcttgcttga |
99 |
Q |
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| T |
50274252 |
tgaagaagatgctgcaattttggtcccaggtgatatcatcagcattaaattaggagatatcattcctgctgatgctcgtctgcttga |
50274338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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