View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19188_high_4 (Length: 273)
Name: NF19188_high_4
Description: NF19188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19188_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 24211399 - 24211646
Alignment:
| Q |
8 |
cagagacctcattatcgtttggtttcacttcaatgaaagactcatcaatgtttggtttcaaatcaagggaagcttcaacattgtttgaatttggatcaag |
107 |
Q |
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| T |
24211399 |
cagagacctcattatcgtttggtttcacttcaatgaaagactcatcaatgtttggtttcaaatcaagggaagcttcaacattgtttgaatttggatcaag |
24211498 |
T |
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| Q |
108 |
agggtgttcaacaataataataaatattaaaataaaattnnnnnnnnnnnnnctaataattttcaaacatcaacaaaatgcaattaaaatagaggaatca |
207 |
Q |
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| T |
24211499 |
agggtgttcaacaataataataaatattaaaaaaaaaattataaaaaaaaaactaataattttcaaacatcaacaaaatgcaattaaaatagaggaatca |
24211598 |
T |
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| Q |
208 |
gtttgctcattggttcagttgttaagatccaaacttggttcgggtcgt |
255 |
Q |
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| T |
24211599 |
gtttgctcattggttcagttgttaagatccaaacttggttcgggtcgt |
24211646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 24206249 - 24206301
Alignment:
| Q |
172 |
aaacatcaacaaaatgcaattaaaatagaggaatcagtttgctcattggttca |
224 |
Q |
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| T |
24206249 |
aaacatcaacaaaatgtaattaaaatagtggaattagtttgctgattggttca |
24206301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 24206117 - 24206177
Alignment:
| Q |
8 |
cagagacctcattatcgtttggtttcacttcaatgaaagactcatcaatgtttggtttcaa |
68 |
Q |
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| T |
24206117 |
cagaaacctcaacatcatttgatttcacatcaacgaaagactcaacaatgtttggtttcaa |
24206177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 55973944 - 55973823
Alignment:
| Q |
24 |
gtttggtttcacttcaatgaaagactcatcaatgtttggtttcaaatcaagggaagcttcaacattgtttgaatttggatcaagagggtgttcaacaata |
123 |
Q |
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|||||||||||| ||| | ||||||||| |||| || ||||||| |||| |||||| ||||| |||| ||||||||||||||||||||||||||| ||| |
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| T |
55973944 |
gtttggtttcacatcagtaaaagactcaataatgcttagtttcaattcaacggaagcatcaacgttgtatgaatttggatcaagagggtgttcaaccata |
55973845 |
T |
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| Q |
124 |
ataataaatattaaaataaaat |
145 |
Q |
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| T |
55973844 |
actacaaatatcaaaataaaat |
55973823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 55980972 - 55980912
Alignment:
| Q |
85 |
acattgtttgaatttggatcaagagggtgttcaacaataataataaatattaaaataaaat |
145 |
Q |
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| T |
55980972 |
acattgtttaaatttggatcaaaagtgtgttcaaccataactaaaaatatcaaaataaaat |
55980912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 21093281 - 21093200
Alignment:
| Q |
25 |
tttggtttcacttcaatgaaagactcatcaatgtttggtttcaaatcaagggaagcttcaacattgtttgaatttggatcaa |
106 |
Q |
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| T |
21093281 |
tttggtttcaaatcaatggaaatctcaacaatgtttggtttcaaattaacagaagcttcaacattgtttgactttggatcaa |
21093200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 9265249 - 9265177
Alignment:
| Q |
53 |
caatgtttggtttcaaatcaagggaagcttcaacattgtttgaatttggatcaagagggtgttcaacaataat |
125 |
Q |
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| T |
9265249 |
caatatttgatttcacaacaatggaaacttcgacattgtttgaatttggattaataggatgttcaaccataat |
9265177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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