View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19188_low_1 (Length: 541)
Name: NF19188_low_1
Description: NF19188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19188_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Complemental strand, 35429801 - 35429281
Alignment:
| Q |
17 |
acaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagtcgaacgattgatgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429801 |
acaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagtcgaacgattgatgca |
35429702 |
T |
|
| Q |
117 |
tccatagatcaactgggcaatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429701 |
tccatagatcaactgggcaatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaa |
35429602 |
T |
|
| Q |
217 |
attgaacatttatcgttggaatttgaaatagtttcatcaactgatttcaatgacaaacccacattttgttgagaaatagaacattgatagtattgatcta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35429601 |
attgaacatttatcgttggaatttgaaatagtttcatcaaccgatttcaatgacaaaccaacattttgttgagaaatagaacattgatagtattgatcta |
35429502 |
T |
|
| Q |
317 |
atccatcttcttcaacctcgagtgtggtaactctacggagcagcacattcatctccaacgttccacgttcttcgatgttgagtgcaaccatatttctagc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35429501 |
atccatcttcttcaacctcgagtgtggtaactctacggagcagcacattcatctccaacgttccacattcttcgatgttgagtgcaaccatatttctagc |
35429402 |
T |
|
| Q |
417 |
acattctttaatgccagacagaagtttgtctaatatgccgttagacatatcacggaagatgctgaacacgaagagattgtttagaacaacatcatccatg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429401 |
acattctttaatgccagacagaagtttgtctaatatgccgttagacatatcacggaagatgctgaacacgaagagattgtttagaacaacatcatccatg |
35429302 |
T |
|
| Q |
517 |
tgtgtttgttcattataattg |
537 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35429301 |
tgtgtttgttcattataattg |
35429281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Complemental strand, 35420662 - 35420141
Alignment:
| Q |
17 |
acaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagtcgaacgattgatgca |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35420662 |
acaagggacttcaattaatgcatgcatattgtcccttctctactcacattatctcttgtcgacacattggacaagaatacggagttgaacgattgatgca |
35420563 |
T |
|
| Q |
117 |
tccatagatcaactgggcaatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaa |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35420562 |
tccatagatcaactgggcaatacactctttatgaaaaatatgagagcattttgtatgaaagagttctgactgcgattcgttgtgcaactcctccaaacaa |
35420463 |
T |
|
| Q |
217 |
attgaacatttatcgttggaatttgaaatagtttcatcaactgatttcaatgacaaacccacattttgttgagaaatagaacattgatagtattgatcta |
316 |
Q |
| |
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|||||||||| |||| |||||||||||| ||||||| || | |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
35420462 |
attgaacattcatcggtggaatttgaaagagtttcaacatccgatttcgatgacaaacccacattttgttgataaatagaactttgatagtattgatcta |
35420363 |
T |
|
| Q |
317 |
atccatcttcttcaacctcgagtgtggtaactctacggagcagcacattcatctccaacgttccacgttcttcgatgttgagtgcaaccatatttctagc |
416 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |
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| T |
35420362 |
atccatcttcttcaacaacgagtgtagtaactctaaggagcagcacattcatctccaatgttccagattcttcgatgttgagtgcagccatatttctagc |
35420263 |
T |
|
| Q |
417 |
acattctttaatgccagacagaagtttgtctaatatgccgttagacatatcacggaagatgctgaacacgaagagattgtttagaacaacatcatccatg |
516 |
Q |
| |
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||| ||||||||| |||||| |||||||||||||||||| | || || ||||| | ||||||||||| ||||||| |||||||||||| | |||||||| |
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| T |
35420262 |
acaatctttaatgtcagacaaaagtttgtctaatatgccttgaggcacatcactaaggatgctgaacaagaagagagtgtttagaacaataacatccatg |
35420163 |
T |
|
| Q |
517 |
tgtgtttgttcattataattga |
538 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
35420162 |
tatgtttgttcattataattga |
35420141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 35423604 - 35423499
Alignment:
| Q |
74 |
gtcgacacattggacaagaatacggagtcgaacgattgatgcatccatagatcaactgggcaatacactctttatgaaaaacatgagagcattttgtatg |
173 |
Q |
| |
|
||||||||| ||| |||||||| | || || |||| |||||||| || ||| ||| | ||||||||||| ||||||||||||||||||||||||||| |
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| T |
35423604 |
gtcgacacaatgggcaagaataagaagatgagcgatcgatgcatcgatcaatccacttgctaatacactcttcatgaaaaacatgagagcattttgtatg |
35423505 |
T |
|
| Q |
174 |
aaagag |
179 |
Q |
| |
|
|||||| |
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|
| T |
35423504 |
aaagag |
35423499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 42974125 - 42974029
Alignment:
| Q |
134 |
caatacactctttatgaaaaacatgagagcattttgtatgaaagagttttgactgcgattcgttgtgcaactcctccaaacaaattgaacatttatc |
230 |
Q |
| |
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|||||||||||||||| |||||||| || |||||| ||| |||||| ||| |||||| | || ||||||||||||||||| ||||||||||| |
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| T |
42974125 |
caatacactctttatggaaaacatgcgaacattttctatagtagagttctgaatgcgatcctttacaaaactcctccaaacaaatcgaacatttatc |
42974029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 42973910 - 42973845
Alignment:
| Q |
354 |
gagcagcacattcatctccaacgttccacgttcttcgatgttgagtgcaaccatatttctagcaca |
419 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||| ||| |||| ||||||| ||||| ||||| |
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| T |
42973910 |
gagcaacacattcatctccaaaattccacgttcttctgtgtcgagtacaaccatgtttctcgcaca |
42973845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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