View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19188_low_4 (Length: 280)
Name: NF19188_low_4
Description: NF19188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19188_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 27066218 - 27065957
Alignment:
| Q |
19 |
aaggtggatttcaataactacggtcttaatccaggttatccaaaatctccaggaagtgaaactttcaaaggctatgctaaaggtgctgatttagatcata |
118 |
Q |
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| T |
27066218 |
aaggtggatttcaataactacggtcaaaatccagattatccaaaatctccaggaagtgaaactttcaaaggctatgctaaaggtgctgatttagatcata |
27066119 |
T |
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| Q |
119 |
aggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaactactgcttcaac |
218 |
Q |
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| T |
27066118 |
aggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaactactacttcaac |
27066019 |
T |
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| Q |
219 |
taactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttcc |
280 |
Q |
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| T |
27066018 |
taactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttcc |
27065957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 27079810 - 27079674
Alignment:
| Q |
147 |
taataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaa---ctactgcttcaactaactctcttagtgatagtggtagt |
243 |
Q |
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| T |
27079810 |
taataacacgtttaaggattacgataaaaaaggtatttcttttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagt |
27079711 |
T |
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| Q |
244 |
ttggcaaaaaacatggttcaacctggtaagtttttcc |
280 |
Q |
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| T |
27079710 |
ttggcaaaaaaatgggttcaacctggtaagtttttcc |
27079674 |
T |
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