View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19188_low_7 (Length: 255)
Name: NF19188_low_7
Description: NF19188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19188_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 4519849 - 4520093
Alignment:
| Q |
11 |
agaatatcacgagctctggttaggaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaaagagaattttaaacagcagaaac |
110 |
Q |
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| T |
4519849 |
agaatatcacgagctctggttaggaaatgttccactgcaaagtcctcaaaattctaaaaccaaaaataacacttaaaagagaattttaaacagcagaaac |
4519948 |
T |
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| Q |
111 |
ttcaaggattgaaatgaagtgtaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaa |
210 |
Q |
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| T |
4519949 |
ttcaaggattgaaatgaagtctaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaa |
4520048 |
T |
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| Q |
211 |
aattgaaaatagagaaggtaacagcaagaaaatagcataagcaat |
255 |
Q |
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| T |
4520049 |
aattgaaaatagagaaggtaacagcaagaaaatagcataagcaat |
4520093 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 5838316 - 5838392
Alignment:
| Q |
11 |
agaatatcacgagctctggttaggaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaa |
87 |
Q |
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| T |
5838316 |
agaatatcatgagctcggacgaggaaatgccccactataaaatcctcaaaattctgaaaccaaaaataacacttaaa |
5838392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 38792158 - 38792212
Alignment:
| Q |
34 |
gaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaaa |
88 |
Q |
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| T |
38792158 |
gaaatgctccacaacaaagtcctcgaaattctgaaaccaaaaataactcttaaaa |
38792212 |
T |
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