View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_1 (Length: 693)
Name: NF19189_high_1
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 220 - 429
Target Start/End: Complemental strand, 41323727 - 41323518
Alignment:
| Q |
220 |
ggtgatatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaaccacttttatatacatcct |
319 |
Q |
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| T |
41323727 |
ggtgatatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaaccacttttatatacatcct |
41323628 |
T |
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| Q |
320 |
gtttggagacacttgaaggtaactagtaacgacttgtaacttttattacataatagcagttgaaatctagcgcaattggttggtgtgtgagtgttgtaaa |
419 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41323627 |
gtttggagacacttgaaggtaactagtaacgaattgtaacttttattacataatagcagttgagatctagcgcaattggttggtgtgtgagtgttgtaaa |
41323528 |
T |
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| Q |
420 |
ttcgactgac |
429 |
Q |
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|||||||||| |
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| T |
41323527 |
ttcgactgac |
41323518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 490 - 678
Target Start/End: Complemental strand, 41323457 - 41323269
Alignment:
| Q |
490 |
gtattaattgttctaaatgaatttggcaaaaataccctgcagttttccttctaaagatatttcgtatatttcttttataggaatgcacattcagttctcc |
589 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41323457 |
gtattaattgttctaaatgaattcggcaaaaataccctgcagttttccttctaaagatatttcgtatatttcttttataggaatgcacattcagttctcc |
41323358 |
T |
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| Q |
590 |
aggtgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggtttgccttcatgtttc |
678 |
Q |
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| T |
41323357 |
aggcgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggtttgccttcatgtttc |
41323269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 41323934 - 41323769
Alignment:
| Q |
13 |
aatatacatgagctaggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagtttcgtagatcatac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41323934 |
aatatacatgagctaggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagtttcgtagatcatac |
41323835 |
T |
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| Q |
113 |
taacggtgatgaaccaaaaagatacacggtatattcactctctaatgtctaaattgttcgttgaag |
178 |
Q |
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| T |
41323834 |
taacggtgacgaaccaaaaagatacacggtatattcactctccaatgtctaaattgttagttgaag |
41323769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 41309303 - 41309186
Alignment:
| Q |
26 |
taggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagtttcgtagatcatactaacggtgatgaa |
125 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| || | | || |||||| |||||||||| ||||||||| |||| ||||||| |
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| T |
41309303 |
taggtttggaggcttcatggcatttctcatttacatgatcacaacctttgctttgtatgttcctaattggagttttgtagatcatgttaacaatgatgaa |
41309204 |
T |
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| Q |
126 |
ccaaaaagatacacggta |
143 |
Q |
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||||| |||||||||||| |
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| T |
41309203 |
ccaaagagatacacggta |
41309186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 567 - 663
Target Start/End: Complemental strand, 41308826 - 41308730
Alignment:
| Q |
567 |
taggaatgcacattcagttctccaggtgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggt |
663 |
Q |
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|||| ||||||||| ||||| ||| |||| |||||| |||| || ||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
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| T |
41308826 |
taggcatgcacatttagttccccaagtgagggtccatttcgtgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgaggt |
41308730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 41309104 - 41308995
Alignment:
| Q |
220 |
ggtgatatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaaccacttttatatacatcct |
319 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||| ||| |||||||||||| || ||||| || ||| |
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| T |
41309104 |
ggtgatatgtgggatgagagggcaccttggtcctgcatgtaacgctgttggatatgttgatagacaaacttggggggttaatcatctttattctcaacct |
41309005 |
T |
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| Q |
320 |
gtttggagac |
329 |
Q |
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|||||||||| |
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| T |
41309004 |
gtttggagac |
41308995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 27657940 - 27658015
Alignment:
| Q |
225 |
tatgtgggatgagaggacacagaggccctgcatgtaacgctgttggatatgtcgataggcaagtttggggggttaa |
300 |
Q |
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|||||||||| ||||||||| ||| |||||||||||||||||||| ||||| ||||| ||| | ||||||||||| |
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| T |
27657940 |
tatgtgggattagaggacacttaggtcctgcatgtaacgctgttgggtatgtggatagacaaatgtggggggttaa |
27658015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 27657748 - 27657822
Alignment:
| Q |
26 |
taggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagttt |
100 |
Q |
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|||| ||||||| ||| |||||||| | ||||||||| |||| ||||||| |||||||||||| ||||||||||| |
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| T |
27657748 |
taggcttggagggtttgtggcatttgttatttacatggtcactactttcagcctctacgttccagattggagttt |
27657822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 663
Target Start/End: Original strand, 27658321 - 27658411
Alignment:
| Q |
573 |
tgcacattcagttctccaggtgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggt |
663 |
Q |
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||||||||||||||||||| ||| ||||| |||| | ||||| |||| |||||||||||||| |||||||| ||||| || ||||||| |
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| T |
27658321 |
tgcacattcagttctccagctgatggtcctcttcgtaaggatgcaccaacatggtgtcgtgctccttttgaacctgagggttttttgaggt |
27658411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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