View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_10 (Length: 393)
Name: NF19189_high_10
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 53613724 - 53614106
Alignment:
| Q |
11 |
atgaacttggtttaataataaagcaaaataaaaggaaaaaagggagaatatgtgatgataaaatgagtatgacctcagctgatatgtcaaagtatgatct |
110 |
Q |
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| T |
53613724 |
atgaacttggtttaataataaagcaaaataaaaggaaaaaagggagaatttgtgatgataaaatgagtatgacctcagctgatatgtcaaagtatgatct |
53613823 |
T |
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| Q |
111 |
agaacacctcgtcattgtctctttcgagtgcattttcatctgatatgaagagtaaaagttcatttgtgttgccagactctagaaaaggtaaatattttca |
210 |
Q |
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| T |
53613824 |
agaacacctcgtcattgtctctttcgagtgcattttcatctgatattaagagtaaaagttcatttgtgttgccagactctagaaaaggttaatattttca |
53613923 |
T |
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| Q |
211 |
tcaagcatttaaaaatcaaattataagcactgttttagaccttaaagttgttcannnnnnnnactgacagtctaacatctgctgcagcagcttctatttt |
310 |
Q |
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| T |
53613924 |
tcaagcatttaaaaatcaaattataagcactgttttagaccttaaagttgttcattttttttactgacagtctaacatctgctgcagcagcttctatttt |
53614023 |
T |
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| Q |
311 |
ttcgacggtttcagtgattgtatgttgggatccaagccttgttgtctgcttcatgtgatcctaaacatcaaactcataacatc |
393 |
Q |
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| T |
53614024 |
ttcgacggtttcagtgattgtatgttgggatccaagccttgttgtctgcttcatgtgatcctaaacatcaaactcataacatc |
53614106 |
T |
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