View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_high_11 (Length: 390)

Name: NF19189_high_11
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_high_11
NF19189_high_11
[»] chr7 (7 HSPs)
chr7 (37-376)||(48012008-48012348)
chr7 (124-368)||(48016496-48016748)
chr7 (37-133)||(48012614-48012709)
chr7 (1-40)||(472594-472633)
chr7 (1-35)||(26041838-26041872)
chr7 (3-35)||(22569584-22569616)
chr7 (3-35)||(27383591-27383623)
[»] chr4 (5 HSPs)
chr4 (3-35)||(46849606-46849638)
chr4 (1-35)||(2735624-2735658)
chr4 (3-35)||(5904913-5904945)
chr4 (3-35)||(14525962-14525994)
chr4 (3-35)||(42018912-42018944)
[»] chr6 (1 HSPs)
chr6 (1-35)||(12586659-12586693)
[»] chr5 (6 HSPs)
chr5 (1-35)||(18508525-18508559)
chr5 (1-35)||(30644915-30644949)
chr5 (1-35)||(35463563-35463597)
chr5 (1-42)||(39548623-39548664)
chr5 (3-35)||(4821610-4821642)
chr5 (3-35)||(5187146-5187178)
[»] chr2 (4 HSPs)
chr2 (1-34)||(16203446-16203479)
chr2 (3-35)||(2804510-2804542)
chr2 (3-39)||(4844045-4844081)
chr2 (3-35)||(18064454-18064486)
[»] chr1 (8 HSPs)
chr1 (1-34)||(31697117-31697150)
chr1 (3-40)||(48984330-48984367)
chr1 (3-35)||(9478642-9478674)
chr1 (3-35)||(15073416-15073448)
chr1 (3-35)||(35368857-35368889)
chr1 (3-35)||(36986012-36986044)
chr1 (3-35)||(45678373-45678405)
chr1 (3-35)||(49548636-49548668)
[»] scaffold0533 (1 HSPs)
scaffold0533 (3-35)||(3839-3871)
[»] chr8 (1 HSPs)
chr8 (3-35)||(44978359-44978391)
[»] chr3 (4 HSPs)
chr3 (3-35)||(39198940-39198972)
chr3 (3-35)||(44712090-44712122)
chr3 (3-35)||(47873098-47873130)
chr3 (3-35)||(50531133-50531165)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 37 - 376
Target Start/End: Complemental strand, 48012348 - 48012008
Alignment:
Q  37 tattgtatatgcttacgtgagcggaagattgtgataatttttcccaaggttgtggtcaatcatttatatctgtaatatttacacagtaacacaatatatt 136  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48012348 tattgtatatgcttacgtgagtggaagattgtgataatttttcccaaggtcgtggtcaatcatttatatctgtaacatttacacagtaacacaatatatt 48012249  T
Q  137 ttggtaaaagggatacactgcttagaagaaataaagacctatatgctttttgtttatgtttactacttccattttcatgttttttagaaaaataaatcta 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48012248 ttggtaaaagggatacactgcttagaagaaataaagacctatatgctttttgtttatgtttactacttccattttcatgttttttagaaaaataaatcta 48012149  T
Q  237 a-agaaattttttcttgtaaatgaaatccaaaatcacatatgacaaaaatatattaccaatgtttaaactccatagtagataaatgcataaaatatatga 335  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48012148 agagaaattttttcttgtaaatgaaatccaaaatcacatatgacaaaaatatattaccaatgtttaaactccatagtagataaatgcataaaatatatga 48012049  T
Q  336 taccatattatcattatggcataaacccattagttcatttt 376  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  48012048 taccatattatcattatggcctaaacccattagttcatttt 48012008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 368
Target Start/End: Complemental strand, 48016748 - 48016496
Alignment:
Q  124 aacacaatatattttggtaaaagggatacactgcttagaagaaataaagacctatatgctttttgtttatgtttactacttccattttcatgttttttag 223  Q
    ||||| ||||||||| || ||||||||||| | || ||||||||||||| |||||||| |||| |||| | ||| ||||||||||   |||||||||       
T  48016748 aacactatatattttagtgaaagggatacatttctaagaagaaataaaggcctatatggttttcgtttctattttctacttccatca-catgtttttcga 48016650  T
Q  224 aaaaataaa----tctaa---aga-aattttttcttgtaaatgaaatccaaaatcacatatgacaa-aaatatattaccaatgtttaaactccatagtag 314  Q
    |||||||||    | |||   ||| |||||||||||||||||||||||| ||||| || |||| || ||| ||||| |||||||||||||||||||||||    
T  48016649 aaaaataaaaacatttaaccaagataattttttcttgtaaatgaaatccgaaatctcaaatgaaaataaaaatatttccaatgtttaaactccatagtag 48016550  T
Q  315 ataaatgcataaaatatatgataccatattatcattatggcataaacccattag 368  Q
    |||| |||| ||||  ||||||||  ||||  |||| || | ||||||||||||    
T  48016549 ataattgcagaaaaattatgatacattatttgcattgtgacctaaacccattag 48016496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 48012709 - 48012614
Alignment:
Q  37 tattgtatatgcttacgtgagcggaagattgtgataatttttcccaaggttgtggtcaatcatttatatctgtaatatttacacagtaacacaatat 133  Q
    |||||||||||||||  ||||  ||||||||||||||| || || |||||  |||| |||||||||||| ||||||||||| | || ||||||||||    
T  48012709 tattgtatatgcttaattgagttgaagattgtgataatattccctaaggtcatggt-aatcatttatatatgtaatatttatataggaacacaatat 48012614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 472633 - 472594
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagcatatt 40  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  472633 aataaatacttaagggaccaaaagagcatttaagcatatt 472594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26041838 - 26041872
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  26041838 aataaatatttaagggaccaaaagagcatttaagc 26041872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 22569616 - 22569584
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  22569616 taaatagttaagggatcaaaagagcatttaagc 22569584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 27383591 - 27383623
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  27383591 taaatacttaagggatcaaaagagcatttaagc 27383623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 46849606 - 46849638
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||||||||||||||||||||||||||||||    
T  46849606 taaatatttaagggatcaaaagagcatttaagc 46849638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2735624 - 2735658
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  2735624 aataaatatttaagggaccaaaagagcatttaagc 2735658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 5904913 - 5904945
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  5904913 taaatagttaagggatcaaaagagcatttaagc 5904945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 14525962 - 14525994
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  14525962 taaatagttaagggatcaaaagagcatttaagc 14525994  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 42018912 - 42018944
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  42018912 taaataattaagggatcaaaagagcatttaagc 42018944  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12586693 - 12586659
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  12586693 aataaatacttaagggatcaaaagagcatttaagc 12586659  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18508559 - 18508525
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  18508559 aataaatacttaagggatcaaaagagcatttaagc 18508525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30644949 - 30644915
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  30644949 aataaatatttaagggaccaaaagagcatttaagc 30644915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35463597 - 35463563
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  35463597 aataaatatttaagggaccaaaagagcatttaagc 35463563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39548623 - 39548664
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaagcatattgt 42  Q
    |||||||| |||||||| ||||||||||||||||| ||||||    
T  39548623 aataaatacttaagggaccaaaagagcatttaagcctattgt 39548664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 4821642 - 4821610
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  4821642 taaatagttaagggatcaaaagagcatttaagc 4821610  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 5187146 - 5187178
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||| |||||||||||||||||    
T  5187146 taaatatttaagggaccaaaagagcatttaagc 5187178  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16203479 - 16203446
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaag 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  16203479 aataaatatttaagggaccaaaagagcatttaag 16203446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 2804542 - 2804510
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  2804542 taaatacttaagggatcaaaagagcatttaagc 2804510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 4844081 - 4844045
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagcatat 39  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4844081 taaatagttaagggaccaaaagagcatttaagcatat 4844045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 18064454 - 18064486
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  18064454 taaatacttaagggatcaaaagagcatttaagc 18064486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31697150 - 31697117
Alignment:
Q  1 aataaatatttaagggatcaaaagagcatttaag 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  31697150 aataaatatttaagggaccaaaagagcatttaag 31697117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 48984330 - 48984367
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagcatatt 40  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  48984330 taaatatttaagggaccaaaagagcatttaagcctatt 48984367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 9478642 - 9478674
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  9478642 taaatagttaagggatcaaaagagcatttaagc 9478674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 15073448 - 15073416
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  15073448 taaatagttaagggatcaaaagagcatttaagc 15073416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 35368889 - 35368857
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||| |||||||||||||||||    
T  35368889 taaatatttaagggaccaaaagagcatttaagc 35368857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 36986012 - 36986044
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||||||||| ||||||||||||||||||||    
T  36986012 taaatatttaagagatcaaaagagcatttaagc 36986044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 45678405 - 45678373
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  45678405 taaatagttaagggatcaaaagagcatttaagc 45678373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 49548636 - 49548668
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  49548636 taaatagttaagggatcaaaagagcatttaagc 49548668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 3871 - 3839
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  3871 taaatacttaagggatcaaaagagcatttaagc 3839  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 44978359 - 44978391
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  44978359 taaatacttaagggatcaaaagagcatttaagc 44978391  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 39198940 - 39198972
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  39198940 taaatagttaagggatcaaaagagcatttaagc 39198972  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 44712090 - 44712122
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||| |||||||||||||||||    
T  44712090 taaatatttaagggaccaaaagagcatttaagc 44712122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 47873098 - 47873130
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    |||||| ||||||||||||||||||||||||||    
T  47873098 taaatagttaagggatcaaaagagcatttaagc 47873130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 50531133 - 50531165
Alignment:
Q  3 taaatatttaagggatcaaaagagcatttaagc 35  Q
    ||||||||||||||| |||||||||||||||||    
T  50531133 taaatatttaagggaccaaaagagcatttaagc 50531165  T

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