View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_13 (Length: 377)
Name: NF19189_high_13
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 35 - 377
Target Start/End: Original strand, 33941909 - 33942249
Alignment:
| Q |
35 |
atatatataattcaaaacattttctacttcttcaaagtgaaacaacgggcaatctt-gtttggatctgaannnnnnnggaattaaagaggcttaagctaa |
133 |
Q |
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| T |
33941909 |
atatatataattcaaaacattttctacttcttcaaagtgaaacaatgggcaatctttgtttggatctgaattattttggaattaaagaggcttaagctaa |
33942008 |
T |
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| Q |
134 |
agnnnnnnntacaaaacaatccacaatcaaacatggagtaagcaactccataactaaaggaaacctaagctgagcaggaatgtctaacaaatatttaatt |
233 |
Q |
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| T |
33942009 |
agaaaaaa-tacaaaacaatccacaatcaaacatggagtaagcaactccataactaaaggaaacctaagctgagcaggaatgtctaacaaatatttaatt |
33942107 |
T |
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| Q |
234 |
gaaagaaaatatagacttccttaacattacaataaagcatttgatttttggggtttgcgatggttatgaatcaagtgttgaagaaattttttcatgaaac |
333 |
Q |
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| T |
33942108 |
gagagaaaatatagacttccttaatattaca--aaagcatttgatttttggggtttgcgatggttatgaatcaagtgttgaagaaattttttcatgaaac |
33942205 |
T |
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| Q |
334 |
agtgggcaatttcattccactcatcaactctttgcaatgaaaat |
377 |
Q |
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| T |
33942206 |
agtgggcaatctcattccactcatcaactctttgaaatgaaaat |
33942249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 40271958 - 40271849
Alignment:
| Q |
189 |
aaaggaaacctaagctgagcaggaatgtctaacaaatatttaattgaaagaaaatatagacttccttaacattacaataaagcatttgatttttggggtt |
288 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | | |||| |||||||||||||||||||||| |
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| T |
40271958 |
aaaggaaacctaagctgagcaggaatgtcttacaaatatttaattgaaagaaa--atagacttccttgataataca--aaagcatttgatttttggggtt |
40271863 |
T |
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| Q |
289 |
tgcgatggttatga |
302 |
Q |
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| T |
40271862 |
tgtgatggatatga |
40271849 |
T |
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