View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_15 (Length: 355)
Name: NF19189_high_15
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 49987478 - 49987803
Alignment:
| Q |
13 |
atactcactgacgggtctatagataaagtaatcaccaatgctgtgttttctcacattcatttcaattgtctactctggagggtaaaataaattcaacatt |
112 |
Q |
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| T |
49987478 |
atactcactgacgggtctatagataaagtaatcaccaatgctgtgttttctcacattcatgtcaattgtctactctagagggtgaaataaattcaacatt |
49987577 |
T |
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| Q |
113 |
catgaagttggtataagaacattttcatttgtctaaagttttatcttgtctttctttttgtttataaaacagatggatctgccggtgttgtggtaaatgg |
212 |
Q |
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| T |
49987578 |
catgaagttggtataagaacattttcatttgtctaaagttttatcttgtctttctttttgtttataaaacagatggatctgccggtgttgtggtaaatgg |
49987677 |
T |
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| Q |
213 |
tgatgttgttgctcagggttcctaattttctttaaatgatgttgagttgtggttgctcagatagctctagttgtgagccttagaagatctttaagcaact |
312 |
Q |
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| T |
49987678 |
tgatgttgttgctcagggttcctaattttctttaaatgatgtcgagttgtggttgctcagatagctctagttgtgagccttagaagatctttaagcaact |
49987777 |
T |
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| Q |
313 |
tccaagagaaagctagttgtaccata |
338 |
Q |
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| T |
49987778 |
tccaagagaaagctagctgtaccata |
49987803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 134 - 276
Target Start/End: Complemental strand, 42302521 - 42302381
Alignment:
| Q |
134 |
ttttcatttgtctaaagttttatcttgtctttctttttgtttataaaacagatggatctgccggtgttgtggtaaatggtgatgttgttgctcagggttc |
233 |
Q |
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| T |
42302521 |
ttttcatttgtctaaaattt-atcttgtttttcatttcatttgtaa--cagatggatgttccagtgttgtggttaatggcgatgttgttgctcagggttc |
42302425 |
T |
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| Q |
234 |
ctaattttctttaaatgatgttga-gttgtggttgctcagatag |
276 |
Q |
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| T |
42302424 |
ccaattttctttaaatgatgttgaggttgtggttgctcagatag |
42302381 |
T |
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