View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_high_16 (Length: 350)

Name: NF19189_high_16
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_high_16
NF19189_high_16
[»] chr4 (7 HSPs)
chr4 (66-348)||(21833445-21833727)
chr4 (171-287)||(53761012-53761128)
chr4 (106-231)||(7308230-7308355)
chr4 (17-58)||(21833753-21833794)
chr4 (104-152)||(1601177-1601225)
chr4 (104-153)||(371298-371347)
chr4 (106-158)||(8183616-8183668)
[»] chr1 (3 HSPs)
chr1 (105-309)||(19467623-19467827)
chr1 (106-148)||(7554870-7554912)
chr1 (18-56)||(19467876-19467914)
[»] chr6 (2 HSPs)
chr6 (200-309)||(6588459-6588568)
chr6 (171-302)||(6416809-6416940)
[»] chr3 (2 HSPs)
chr3 (165-302)||(51763583-51763720)
chr3 (171-302)||(13469857-13469988)
[»] chr7 (1 HSPs)
chr7 (181-294)||(10615440-10615553)
[»] chr5 (2 HSPs)
chr5 (200-309)||(28532580-28532689)
chr5 (104-152)||(41900804-41900852)
[»] chr8 (3 HSPs)
chr8 (185-238)||(17635904-17635957)
chr8 (165-238)||(18318891-18318964)
chr8 (104-238)||(18314885-18315019)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 66 - 348
Target Start/End: Complemental strand, 21833727 - 21833445
Alignment:
Q  66 aagcagcgaagtctggtatgacataagcgctactactagaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctgttcctct 165  Q
    |||||| || |||||| ||| |||||  |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||  ||    
T  21833727 aagcagtgatgtctggcatgccataactgctactaccagaaaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgct 21833628  T
Q  166 tatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagatta 265  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||    
T  21833627 tatttgatcacaatcaaacatgatgacctcttcaagaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagatta 21833528  T
Q  266 acctttcggagtttgataagtgcaagtgaaagagcttttaccccttcaacatagagaatgtacttttcactatataaggggta 348  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21833527 accttgcggagtttgataagtgcaagtgaaagagcttttaccccttcaacatagagaatgtacttttcaccatataaggggta 21833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 53761128 - 53761012
Alignment:
Q  171 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 270  Q
    ||||||| | ||||| |||| | |||| |||||| ||||||||||| |||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  53761128 gatcacagttaaacaagatgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaacctt 53761029  T
Q  271 tcggagtttgataagtg 287  Q
     |||||||||| |||||    
T  53761028 acggagtttgaaaagtg 53761012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 7308230 - 7308355
Alignment:
Q  106 aaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaagc 205  Q
    |||||||||||| | |||||||||||||||  | ||||| | |||||||||||      ||| ||||| ||| || || |||||||| ||||| ||||||    
T  7308230 aaaggataaagagcgcaatgttggtctctcatgtagagcagtagcaatgcctgcgttggttagttgatgacagtctaatatgatggcctcttccagaagc 7308329  T
Q  206 ttacaattctttaacaagtggaaaag 231  Q
    ||||||||||| ||||||||||||||    
T  7308330 ttacaattcttaaacaagtggaaaag 7308355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 21833794 - 21833753
Alignment:
Q  17 caagtcaaacccttcaaactcagtaatgagccaataaaatat 58  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  21833794 caagtcaaacccttcaaactcactaatgagccaataaaatat 21833753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  104 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaa 152  Q
    |||||||||||||| |||||||||||||||||  ||||||| |||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 371298 - 371347
Alignment:
Q  104 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaat 153  Q
    ||||||||||||||  |||||||||||||||  |||||||| ||||||||    
T  371298 gaaaaggataaagaggtcaatgttggtctctgaaggagagcagaagcaat 371347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 8183668 - 8183616
Alignment:
Q  106 aaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctg 158  Q
    |||||||||||| ||||||||||||||||| || |  || |||||||||||||    
T  8183668 aaaggataaagacctcaatgttggtctctcaagtaatgcagaagcaatgcctg 8183616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 19467827 - 19467623
Alignment:
Q  105 aaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaag 204  Q
    |||| |||||||| |||||||||||||||||  ||| ||| |||||||| || |      | |||||||||||   ||||||| |  | |||||||||||    
T  19467827 aaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttcaagaag 19467728  T
Q  205 cttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagagctttt 304  Q
    ||||||||| || |||||||| ||||  ||||    | | ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| | |    
T  19467727 cttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagagcctct 19467628  T
Q  305 acccc 309  Q
    |||||    
T  19467627 acccc 19467623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 7554870 - 7554912
Alignment:
Q  106 aaaggataaagaactcaatgttggtctctcgaggagagctgaa 148  Q
    |||||||||||| |||||||||||||||||  |||||||||||    
T  7554870 aaaggataaagacctcaatgttggtctctcatggagagctgaa 7554912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 19467914 - 19467876
Alignment:
Q  18 aagtcaaacccttcaaactcagtaatgagccaataaaat 56  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  19467914 aagtcaaacccttcaaactcagcaatgagtcaataaaat 19467876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 6588568 - 6588459
Alignment:
Q  200 agaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagag 299  Q
    |||||||||||||| || |||||||||||||| |||||| |||| ||||| |||  ||||||||||||||| || ||||||| |||||| ||||| ||||    
T  6588568 agaagcttacaattgttgaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagag 6588469  T
Q  300 cttttacccc 309  Q
    | | ||||||    
T  6588468 cctgtacccc 6588459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 6416809 - 6416940
Alignment:
Q  171 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 270  Q
    ||||||||  |||||||||| ||||||| ||||||||||| || |  || || |||||||| |||||  ||||||  || || | |||||||||||| ||    
T  6416809 gatcacaactaaacatgatgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaacttt 6416908  T
Q  271 tcggagtttgataagtgcaagtgaaagagctt 302  Q
     |||||||| | |||||||||||| |||||||    
T  6416909 gcggagtttaaaaagtgcaagtgatagagctt 6416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 51763720 - 51763583
Alignment:
Q  165 ttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagatt 264  Q
    ||||||||||||| |||||||||||| | ||||  ||||||||||| ||   ||  | ||||||||| |||||| ||||||||||  ||||||||| |||    
T  51763720 ttatttgatcacagtcaaacatgatgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaatt 51763621  T
Q  265 aacctttcggagtttgataagtgcaagtgaaagagctt 302  Q
    |||||| || ||||||| ||| ||||||||||| ||||    
T  51763620 aaccttacgcagtttgaaaagagcaagtgaaagtgctt 51763583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 13469988 - 13469857
Alignment:
Q  171 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 270  Q
    ||||||||  |||||||||| ||||||| ||||||||||| || |  || ||||||||||| ||| |  ||||||| || || | |||||||||||||||    
T  13469988 gatcacaactaaacatgatgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaacctt 13469889  T
Q  271 tcggagtttgataagtgcaagtgaaagagctt 302  Q
     |||||||| | |||||||||||| |||||||    
T  13469888 gcggagtttaaaaagtgcaagtgatagagctt 13469857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 10615440 - 10615553
Alignment:
Q  181 aaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttg 280  Q
    ||||| |||| | ||||||||||||||||| || |  | |||||||| ||| |||||| |||||||| | || | ||||||||||||||| ||||||||     
T  10615440 aaacaagatgacctcttcaagaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagttta 10615539  T
Q  281 ataagtgcaagtga 294  Q
    | ||||| ||||||    
T  10615540 aaaagtgaaagtga 10615553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 28532580 - 28532689
Alignment:
Q  200 agaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagag 299  Q
    ||||||||||| ||  | |||||||||||||| |||||  |||| ||||| |||  ||||||||||||||| |||||||||  ||||| |||||| ||||    
T  28532580 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagag 28532679  T
Q  300 cttttacccc 309  Q
    | | ||||||    
T  28532680 cctctacccc 28532689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 41900852 - 41900804
Alignment:
Q  104 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaa 152  Q
    ||||| |||||||| |||||||||||||||| | ||||||| |||||||    
T  41900852 gaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaa 41900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 17635957 - 17635904
Alignment:
Q  185 atgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 238  Q
    ||||||||||||||||||| ||| |||||||| ||||||| || ||||||||||    
T  17635957 atgatggcttcttcaagaaacttccaattcttgaacaagttgagaagagattga 17635904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 18318964 - 18318891
Alignment:
Q  165 ttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 238  Q
    ||||||||||||| ||||  |||||||| ||||| |||||||| || ||||| |||||||||| ||| ||||||    
T  18318964 ttatttgatcacagtcaagtatgatggcctcttcgagaagcttccagttcttgaacaagtggataagcgattga 18318891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 18315019 - 18314885
Alignment:
Q  104 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaa 203  Q
    |||| ||||||||| ||||| |||||||||||  |||||||  ||||||| || |      ||||||||| ||| | ||| ||||| |  ||||| ||||    
T  18315019 gaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgagaa 18314920  T
Q  204 gcttacaattctttaacaagtggaaaagagattga 238  Q
    ||||||| ||||| |||||||||||||| ||||||    
T  18314919 gcttacagttcttgaacaagtggaaaagcgattga 18314885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University