View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_2 (Length: 587)
Name: NF19189_high_2
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 5975464 - 5974892
Alignment:
| Q |
1 |
aaagttaagtggttctatgcataacaaaaagagcagcgctggcctcccatgattttgacagattattactactcaccaaccactcaatttgtttttagtc |
100 |
Q |
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| T |
5975464 |
aaagttaagtggttctatgcataacaaaaagagcagcgctggcctcccatgattttgacagattattactactcaccaaccactcaatttgtttttagtc |
5975365 |
T |
|
| Q |
101 |
ttc-aaatttcaaaaggacatctttgcatgttttcgtgataactatgattacatagtgaaaaatagtaataccataaattctataattttggtaaaattt |
199 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5975364 |
ttccaaatttcaaaaggacatctttgcatgttttcgtgataactatgattacatagtgaaaaatagtaataccatatattctataattttggtaaaattt |
5975265 |
T |
|
| Q |
200 |
tgtgcttattgcaaaacgtttagcacttgttatgataagttggagcaattcagaagctaagaagactaaaataagttagccacaatctaaaggaactcca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5975264 |
tgtgcttattgcaaaacgtttagcacttgttatgataagttggagcaattcagaagctaagaagactaaaataagttagccacaatctaaaggaactcca |
5975165 |
T |
|
| Q |
300 |
tgatcatttggtttgaattcattgagtttgtaaccgaagcaacccaccaacaacttttgatgttgctacctaatatcatacggttggagttggtgtcaca |
399 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5975164 |
tgatcatttggtttgaattcattgagtttgtaactgaagcaacccaccaacaacttttgatgttgctacctaatatcatacggttggagttggtgtcaca |
5975065 |
T |
|
| Q |
400 |
atgtcgtgaaaactattgttggtctgtgttttcttatttccgcaatttatagagcaagagaaaatctcttgatatttgcagcaatgtgattcaatatggt |
499 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5975064 |
atgtcgtgaaaattattgttggtccgtgttttcttatttccgcaatttatagagcaagagaaaatctcttgatatttgcagcaatgtgattcaatatggt |
5974965 |
T |
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| Q |
500 |
accaaaacttgtagctggtgtgaggggtgatgcatgagtaaaacctgccatcatgagactatgggatatatac |
572 |
Q |
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| T |
5974964 |
accaaaacttgtagctggtgtgaggggtgatgcatgagtaaaacctgccatcatgagactatgggatatatac |
5974892 |
T |
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