View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_27 (Length: 298)
Name: NF19189_high_27
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 38 - 280
Target Start/End: Complemental strand, 7659825 - 7659583
Alignment:
| Q |
38 |
gagatgaactgaggagatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtg |
137 |
Q |
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| T |
7659825 |
gagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaaggtcttgatagttataagctatatatttagctccggtg |
7659726 |
T |
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| Q |
138 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
237 |
Q |
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| T |
7659725 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagccagaagccgccacgataacgtccacaaaacctaatttga |
7659626 |
T |
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| Q |
238 |
ggtgcatcaaagggccatggatttttgccaaggctgcaataga |
280 |
Q |
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| T |
7659625 |
ggtgcatcaaagggccatgaatttttgccaaggctgcaataga |
7659583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 7623860 - 7624102
Alignment:
| Q |
38 |
gagatgaactgaggagatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtg |
137 |
Q |
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| T |
7623860 |
gagatgaacggaggagatttttcggagcattcgccacctcggaccataaggggcaaacacaagatcttgatagttataagctatatatttagctccggtg |
7623959 |
T |
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| Q |
138 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
237 |
Q |
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| T |
7623960 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
7624059 |
T |
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| Q |
238 |
ggtgcatcaaagggccatggatttttgccaaggctgcaataga |
280 |
Q |
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| T |
7624060 |
ggtgcattaaagggccatggatttttgccaaggctgcaataga |
7624102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 53 - 281
Target Start/End: Complemental strand, 7675437 - 7675209
Alignment:
| Q |
53 |
gatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
152 |
Q |
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| T |
7675437 |
gatttttctgagtagtcgccaccttggaccataaggaccaaacacaaggtcttgataattataacctatgtacttagctccggcattgggtggccggcta |
7675338 |
T |
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| Q |
153 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
252 |
Q |
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| T |
7675337 |
ctaaagttagcatcatgtacctttaagaattgttccgccacggaggccgaagccgccacgatcacatccaccgagcctaatttgaggtgcatcaaagggc |
7675238 |
T |
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| Q |
253 |
catggatttttgccaaggctgcaatagat |
281 |
Q |
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||| | ||| ||||||| ||||| |||| |
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| T |
7675237 |
cataggtttcagccaaggttgcaagagat |
7675209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 45477762 - 45477623
Alignment:
| Q |
69 |
cgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcat |
168 |
Q |
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||||||||||| |||||||| ||||| |||||||||||||| ||||| |||| ||||| || |||| ||| | |||||||||| ||| || | ||||| |
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| T |
45477762 |
cgccaccgtggtccataaggagcaaaaacaagatcttgataattatatgctaagtatttggcgccggagttagttggccggctagaaaaattggtatcat |
45477663 |
T |
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| Q |
169 |
gaacctttaagaattgttcggcaacggagcctgaagccgc |
208 |
Q |
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| T |
45477662 |
gaacttttaagaattgttcagcgaccgaggcggaagccgc |
45477623 |
T |
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