View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_high_35 (Length: 266)

Name: NF19189_high_35
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_high_35
NF19189_high_35
[»] chr3 (6 HSPs)
chr3 (1-259)||(37932092-37932350)
chr3 (2-41)||(1562828-1562867)
chr3 (2-50)||(2558771-2558819)
chr3 (6-42)||(8526152-8526188)
chr3 (2-42)||(15003660-15003700)
chr3 (2-50)||(40418531-40418579)
[»] chr4 (7 HSPs)
chr4 (2-41)||(1083541-1083580)
chr4 (2-42)||(2942491-2942531)
chr4 (2-41)||(36752392-36752431)
chr4 (5-38)||(2573966-2573999)
chr4 (1-42)||(13218229-13218270)
chr4 (2-50)||(13389044-13389092)
chr4 (2-50)||(29428079-29428127)
[»] chr2 (4 HSPs)
chr2 (6-41)||(11091646-11091681)
chr2 (4-51)||(12541394-12541441)
chr2 (13-51)||(41520521-41520559)
chr2 (2-50)||(43035464-43035512)
[»] chr8 (4 HSPs)
chr8 (2-50)||(43129120-43129168)
chr8 (13-41)||(13634879-13634907)
chr8 (13-41)||(13735292-13735320)
chr8 (1-41)||(26732929-26732969)
[»] chr6 (1 HSPs)
chr6 (2-50)||(23383112-23383160)
[»] chr5 (4 HSPs)
chr5 (2-41)||(671115-671154)
chr5 (2-41)||(36185170-36185209)
chr5 (5-41)||(2025740-2025776)
chr5 (2-50)||(7670390-7670438)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-42)||(411680-411721)
[»] chr7 (2 HSPs)
chr7 (2-51)||(4227357-4227406)
chr7 (2-42)||(41708598-41708638)
[»] chr1 (3 HSPs)
chr1 (2-42)||(15104076-15104116)
chr1 (1-41)||(24254465-24254505)
chr1 (2-42)||(44836174-44836214)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 37932350 - 37932092
Alignment:
Q  1 tggggttcgaatcccgatcatgacatctgacctaacaattttagtattttaatcaattgaaaatacagatttacacatcctaagacgtaagtaaccgtct 100  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37932350 tggggttcgaatcccgattacaacatctgacctaacaattttagtattttaatcagttgaaaatacagatttacacatcctaagacgtaagtaaccgtct 37932251  T
Q  101 tatattggtcattgctatcgttggtcactattgtgttgggttggactatatctcannnnnnnaatctgagagaccaacttactatcaccaccaacacata 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  37932250 tatattggtcattgccatcgttggtcactattgtgttgggttggactatatctcatttttttaatctgagagaccaacttactatcaccaccaacacata 37932151  T
Q  201 actataatgggtaattattgcgatcaacctcagcaaggcgacaacccaccttcatatca 259  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  37932150 actataatgggtaattattgcgatcaacatcaacaaggcgacaacccaccttcatatca 37932092  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 1562867 - 1562828
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  1562867 ggggttcgaaccccgatcatgacatccgacctaacaattt 1562828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 2558819 - 2558771
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    ||||||| || ||||||||||||||| ||||||||||||| || |||||    
T  2558819 ggggttcaaaccccgatcatgacatccgacctaacaatttcagcatttt 2558771  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 8526152 - 8526188
Alignment:
Q  6 ttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    |||||| |||||||||||| |||||||||||||||||    
T  8526152 ttcgaaccccgatcatgacgtctgacctaacaatttt 8526188  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 15003700 - 15003660
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    |||||||||| |||| |||||||||| ||||||||||||||    
T  15003700 ggggttcgaaccccggtcatgacatccgacctaacaatttt 15003660  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 40418531 - 40418579
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    |||||||||| |||||||||||||| || ||||||||||| || |||||    
T  40418531 ggggttcgaaccccgatcatgacatttggcctaacaatttcagcatttt 40418579  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 1083580 - 1083541
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1083580 ggggttcgaaccccgatcatgacatctgacctaacaattt 1083541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 2942491 - 2942531
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  2942491 ggggttcgaatcccgatcatggcatccgacctaacaatttt 2942531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 36752431 - 36752392
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  36752431 ggggttcgaaccccgatcatgacatctggcctaacaattt 36752392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 2573999 - 2573966
Alignment:
Q  5 gttcgaatcccgatcatgacatctgacctaacaa 38  Q
    ||||||||||||||||||||||| ||||||||||    
T  2573999 gttcgaatcccgatcatgacatccgacctaacaa 2573966  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13218270 - 13218229
Alignment:
Q  1 tggggttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    ||||||||||| |||||||||| |||| ||||||||||||||    
T  13218270 tggggttcgaaccccgatcatggcatccgacctaacaatttt 13218229  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 13389092 - 13389044
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    |||||||||| |||| |||||||||| ||||||||||||| || |||||    
T  13389092 ggggttcgaaccccggtcatgacatccgacctaacaatttcagcatttt 13389044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 29428127 - 29428079
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    |||||||||| ||||||||||||||| | |||||||||||  |||||||    
T  29428127 ggggttcgaaccccgatcatgacatccggcctaacaatttcggtatttt 29428079  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 11091646 - 11091681
Alignment:
Q  6 ttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    ||||||||||||||||||||||||||||||||||||    
T  11091646 ttcgaatcccgatcatgacatctgacctaacaattt 11091681  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 12541394 - 12541441
Alignment:
Q  4 ggttcgaatcccgatcatgacatctgacctaacaattttagtatttta 51  Q
    |||||||| ||||||||||||||| |||||||||||||  ||||||||    
T  12541394 ggttcgaaccccgatcatgacatccgacctaacaatttcggtatttta 12541441  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 41520559 - 41520521
Alignment:
Q  13 cccgatcatgacatctgacctaacaattttagtatttta 51  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  41520559 cccgatcatgacatctgacctaacaatttcagcatttta 41520521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 43035512 - 43035464
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    |||||||||| ||||||||||||||| | |||||||||||  |||||||    
T  43035512 ggggttcgaaccccgatcatgacatccggcctaacaatttcggtatttt 43035464  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 43129168 - 43129120
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    ||||||||||||||||||||| |||| |||||||||||||  |||||||    
T  43129168 ggggttcgaatcccgatcatggcatccgacctaacaatttcggtatttt 43129120  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 13634907 - 13634879
Alignment:
Q  13 cccgatcatgacatctgacctaacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  13634907 cccgatcatgacatctgacctaacaattt 13634879  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 13735320 - 13735292
Alignment:
Q  13 cccgatcatgacatctgacctaacaattt 41  Q
    |||||||||||||||||||||||||||||    
T  13735320 cccgatcatgacatctgacctaacaattt 13735292  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26732929 - 26732969
Alignment:
Q  1 tggggttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    ||||||||||| ||||||||||||||| |||||| ||||||    
T  26732929 tggggttcgaaccccgatcatgacatccgacctagcaattt 26732969  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 23383112 - 23383160
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    |||||||||| |||||| |||||||||||||||||||||| || |||||    
T  23383112 ggggttcgaaccccgattatgacatctgacctaacaatttcagcatttt 23383160  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 671115 - 671154
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  671115 ggggttcgaaccccgatcatgacatccgacctaacaattt 671154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 36185209 - 36185170
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  36185209 ggggttcgaaccccgatcatgatatctgacctaacaattt 36185170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 2025740 - 2025776
Alignment:
Q  5 gttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  2025740 gttcgaaccccgatcatgacatccgacctaacaattt 2025776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 7670438 - 7670390
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttt 50  Q
    |||||||||| ||||||||||| ||| || ||||||||||||| |||||    
T  7670438 ggggttcgaaccccgatcatgatatccgatctaacaattttagcatttt 7670390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 411721 - 411680
Alignment:
Q  1 tggggttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    ||||||||||| |||| |||||||||| ||||||||||||||    
T  411721 tggggttcgaaccccggtcatgacatccgacctaacaatttt 411680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 4227406 - 4227357
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaattttagtatttta 51  Q
    |||||||||| |||||||||| |||| |||||||||||||  ||||||||    
T  4227406 ggggttcgaaccccgatcatggcatccgacctaacaatttcggtatttta 4227357  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 41708598 - 41708638
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    |||||||||| ||||||||| ||||| ||||||||||||||    
T  41708598 ggggttcgaaccccgatcataacatccgacctaacaatttt 41708638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 15104116 - 15104076
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    |||||||||| ||||||||||||||| | ||||||||||||    
T  15104116 ggggttcgaaccccgatcatgacatccggcctaacaatttt 15104076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24254465 - 24254505
Alignment:
Q  1 tggggttcgaatcccgatcatgacatctgacctaacaattt 41  Q
    ||||||||||| ||||||||||||||||  |||||||||||    
T  24254465 tggggttcgaaccccgatcatgacatctagcctaacaattt 24254505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 44836174 - 44836214
Alignment:
Q  2 ggggttcgaatcccgatcatgacatctgacctaacaatttt 42  Q
    |||||||||| |||||||||||| || ||||||||||||||    
T  44836174 ggggttcgaaccccgatcatgacgtccgacctaacaatttt 44836214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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