View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_45 (Length: 243)
Name: NF19189_high_45
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3089707 - 3089485
Alignment:
| Q |
1 |
tctgcaaaaaccacatgcgcaacaaaatcctttaacatgcaatgaattgatgaatatgccaaattgatgctaatatatatgcaagtattgtgaacctcac |
100 |
Q |
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| T |
3089707 |
tctgcaaaaaccacatgcgcaacaaaatcctttaacatgcaatgaat-gatgaatatgccaaattgatgctaatatatatgcaagtattgtgaacctcac |
3089609 |
T |
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| Q |
101 |
acaaattagtcatggaggttctatttcacaaattttctgtttagcttaagaaccaaaagaattatttgttgtgtcctttaaagcaaatgttttagaaata |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3089608 |
acaaattagtcatggaggttgtatttcacaaattttctgtttagcttaaggaccaa---aattatttgttgtgtcctttaaagcaaatgttttagaaata |
3089512 |
T |
|
| Q |
201 |
gtagccaattaaaccgattgaacaggg |
227 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
3089511 |
gtagccaattaaaccggttgaacaggg |
3089485 |
T |
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