View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_52 (Length: 208)
Name: NF19189_high_52
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 49352536 - 49352709
Alignment:
| Q |
15 |
cagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352536 |
cagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgt |
49352635 |
T |
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| Q |
115 |
tttgcttgcttctctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcact |
188 |
Q |
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| T |
49352636 |
tttgcttgcttctctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcact |
49352709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 49341164 - 49341329
Alignment:
| Q |
19 |
gacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttg |
118 |
Q |
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|||||||| |||||| |||||||||||||||| || ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49341164 |
gacagtgaaatttgggatttaccacaaaaagatgacgacattttgtctgctatcaaa--aagttatgatcagttaccttcttatttaaaacaatgttttg |
49341261 |
T |
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| Q |
119 |
cttgcttctctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggca |
186 |
Q |
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| T |
49341262 |
cttgcttctctctctttgaaaagtactttccatttattaattttgatgttagtgtgctatgggtggca |
49341329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 32783733 - 32783601
Alignment:
| Q |
15 |
cagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgt |
114 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
32783733 |
cagagacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttacgatcagttaccttcttatttaaaacgatgt |
32783634 |
T |
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| Q |
115 |
tttgcttgcttctctctctttgaaaagaacttt |
147 |
Q |
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||| |||||||||| |||||| ||||| ||||| |
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| T |
32783633 |
tttacttgcttctccctctttcaaaaggacttt |
32783601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 29602362 - 29602241
Alignment:
| Q |
19 |
gacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttg |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||| ||||| ||||||||||||| |||||||| |
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| T |
29602362 |
gacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctatcaaattaagttttgatcaattaccatcttatttaaaacgatgttttg |
29602263 |
T |
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| Q |
119 |
cttgcttctctctctttgaaaa |
140 |
Q |
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| |||||||| ||||| ||||| |
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| T |
29602262 |
cctgcttctccctcttcgaaaa |
29602241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 29750932 - 29751049
Alignment:
| Q |
19 |
gacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttg |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||| || |||||||||| |||||||| |
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| T |
29750932 |
gacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctctcaaattaagttttgatcaattaccctcatatttaaaacgatgttttg |
29751031 |
T |
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| Q |
119 |
cttgcttctctctctttg |
136 |
Q |
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| T |
29751032 |
cctgcttctccctctttg |
29751049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 29743899 - 29744016
Alignment:
| Q |
19 |
gacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttg |
118 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||||| |||||| ||||| |||||||| |||| |||||||| |
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| T |
29743899 |
gacaatgagatttggaatttaccacaaaaaaaagatgatattttgcctgctatcaaattaagttttgatcaattaccgtcttatttgaaacgatgttttg |
29743998 |
T |
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| Q |
119 |
cttgcttctctctctttg |
136 |
Q |
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| T |
29743999 |
cctgcttctccctctttg |
29744016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 35158050 - 35158171
Alignment:
| Q |
19 |
gacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttg |
118 |
Q |
| |
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|||| |||||||||||||||||| |||||||| || |||||||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
35158050 |
gacaatgagatttggaatttaccgcaaaaagacgaggacattttaccagcaatcaaattaagttatgatcaattaccttcttatttaaaacagtgttttg |
35158149 |
T |
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| Q |
119 |
cttgcttctctctctttgaaaa |
140 |
Q |
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|||||||||| ||||||||||| |
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| T |
35158150 |
cttgcttctccctctttgaaaa |
35158171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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