View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_high_7 (Length: 441)

Name: NF19189_high_7
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_high_7
NF19189_high_7
[»] chr7 (13 HSPs)
chr7 (185-441)||(41896534-41896790)
chr7 (15-148)||(41896364-41896497)
chr7 (194-286)||(41829059-41829151)
chr7 (194-286)||(41885561-41885653)
chr7 (185-332)||(41891796-41891943)
chr7 (193-278)||(41901575-41901660)
chr7 (206-286)||(34453742-34453822)
chr7 (372-441)||(41893545-41893614)
chr7 (383-441)||(41901773-41901831)
chr7 (22-105)||(41891556-41891644)
chr7 (45-112)||(41901409-41901476)
chr7 (30-110)||(34453949-34454032)
chr7 (30-70)||(41829293-41829333)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 185 - 441
Target Start/End: Original strand, 41896534 - 41896790
Alignment:
Q  185 agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41896534 agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac 41896633  T
Q  285 tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaatattttatgaagaatatgataaaaattgctaaatttatttatgagaaccgta 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41896634 tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaatactttatgaagaatatgataaaaattgctaaatttatttatgagaaacgta 41896733  T
Q  385 ttacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttc 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41896734 ttacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttc 41896790  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 41896364 - 41896497
Alignment:
Q  15 gaaacagcataaacgacttcaagtaaatgtacccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaacattatgtc 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41896364 gaaacaacataaacgacttcaagtaaatgtacccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaacattatgtc 41896463  T
Q  115 tgcatttagtgtaacagaagggatacagtgtaag 148  Q
    |||||||||||||||| |||||||||||||||||    
T  41896464 tgcatttagtgtaacaaaagggatacagtgtaag 41896497  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 41829151 - 41829059
Alignment:
Q  194 ttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg 286  Q
    ||||||||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41829151 ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg 41829059  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 41885561 - 41885653
Alignment:
Q  194 ttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg 286  Q
    ||||||||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41885561 ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg 41885653  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 185 - 332
Target Start/End: Original strand, 41891796 - 41891943
Alignment:
Q  185 agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac 284  Q
    |||||||||||||| ||||   |  ||||||||| |  |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  41891796 agaagagtgttactaactcggatctagaagaccagaggcccacttcaaatctttctaagcagaatttcataaattcttcagtaaatggtctcttgtaacc 41891895  T
Q  285 tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaa 332  Q
    | ||||||| |||| |||||||| |  |||  ||| ||||||||||||    
T  41891896 tttaacacagttcagaaaataataatcaatgataagtatgcattcaaa 41891943  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 41901575 - 41901660
Alignment:
Q  193 gttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt 278  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  41901575 gttactgactccattgcagaagaccagagtcccacttcaaatctttccaagcagaatttaataaattcttcgctaaatggcctctt 41901660  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 34453822 - 34453742
Alignment:
Q  206 ttgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg 286  Q
    ||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34453822 ttgcacaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg 34453742  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 41893545 - 41893614
Alignment:
Q  372 tatgagaaccgtattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttc 441  Q
    ||||||||  ||||||||||||||||||||||||| || |||||| || |||||||||||||||||||||    
T  41893545 tatgagaaatgtattacggagaaagtaacgatattcgtgatcagcagttcgagactttggaattgctttc 41893614  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 41901773 - 41901831
Alignment:
Q  383 tattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttc 441  Q
    ||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||    
T  41901773 tattacgtagaaagtaaggatatttgtaatcagcagttcgagactttggaattgctttc 41901831  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 41891556 - 41891644
Alignment:
Q  22 cataaacgacttcaagtaaatgt-----acccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaa 105  Q
    ||||| |||||||||||||||||     | |||||||||||| ||||||||||||||||| || ||| ||||| |||||||||||||||    
T  41891556 cataatcgacttcaagtaaatgttatgcagccaaacaaatagcagcttgtttttcgaatctcccataacacattctaaagcaccatcaa 41891644  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 41901409 - 41901476
Alignment:
Q  45 acccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaacattatg 112  Q
    ||||||||||||||||||||||||||| | || || || ||||| ||||||||| |||||| ||||||    
T  41901409 acccaaacaaatagtagcttgtttttcaattctccgatggcacaggctaaagcatcatcaatattatg 41901476  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 34454032 - 34453949
Alignment:
Q  30 acttcaagtaaatgtacccaaacaaatagtagcttgtttttcga---atcgccaatagcacatgctaaagcaccatcaacatta 110  Q
    |||||||| |||||||||||||||||||| ||||| ||||| ||    || ||||||||| | | ||||||||| |||||||||    
T  34454032 acttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctccaatagcaaaagttaaagcaccgtcaacatta 34453949  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 41829333 - 41829293
Alignment:
Q  30 acttcaagtaaatgtacccaaacaaatagtagcttgttttt 70  Q
    |||||||| |||||||||||||||||||| ||||| |||||    
T  41829333 acttcaagaaaatgtacccaaacaaatagcagcttattttt 41829293  T

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