View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_high_8 (Length: 409)
Name: NF19189_high_8
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 14282157 - 14282535
Alignment:
| Q |
15 |
caaaggtaagaacagatacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttc |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282157 |
caaaggtaagaacagctacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttc |
14282256 |
T |
|
| Q |
115 |
acgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaa |
214 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282257 |
acgaaactgttgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaa |
14282356 |
T |
|
| Q |
215 |
tcacggctcctcattatctgaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282357 |
tcacggctcctcattatctgaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacga |
14282456 |
T |
|
| Q |
315 |
cagacacaccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactg |
393 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282457 |
cagacacgccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactg |
14282535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 58 - 393
Target Start/End: Original strand, 14303958 - 14304293
Alignment:
| Q |
58 |
tcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgct |
157 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
14303958 |
tcccatgttcacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccacgct |
14304057 |
T |
|
| Q |
158 |
tgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattactactct |
257 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || | ||||| |||||||| |||||| |||||||| ||||||||||| ||||||| ||| |
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|
| T |
14304058 |
tgaaatttaatcacacgcatgttgttaagcaactcattcgttgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattactattct |
14304157 |
T |
|
| Q |
258 |
ttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacaccaacatagctatacaaaagaaacaatgcagcgga |
357 |
Q |
| |
|
| | ||||||| ||| ||| | ||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||| |||| ||||||||||| |
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|
| T |
14304158 |
tcgatcgatatgcagtgaagcagaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacatagctatacataagagccaatgcagcggc |
14304257 |
T |
|
| Q |
358 |
aacttgcaatggcatcaaccatataggatgaaactg |
393 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||| |
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|
| T |
14304258 |
aacttgtaatggcatcatccaaataggatgaaactg |
14304293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 14320306 - 14320684
Alignment:
| Q |
15 |
caaaggtaagaacagatacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttc |
114 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
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|
| T |
14320306 |
caaaggtaagaacagttacagctaatggggcagtacccaaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctcagcttc |
14320405 |
T |
|
| Q |
115 |
acgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaa |
214 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |
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|
| T |
14320406 |
gcgaaactgttgaattttgttaccaaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagtaactcgtttgtcgccttcatcctcgaa |
14320505 |
T |
|
| Q |
215 |
tcacggctcctcattatctgaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacga |
314 |
Q |
| |
|
|| |||||| ||||||||| |||||| ||||||||||||||||| |||||||| || || |||| | | || ||| | | |||| | || ||| | | |
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|
| T |
14320506 |
tcgcggctcgtcattatcttaaactggaaactattactactcttcgttcgatagagtgtgaagagaaacactatgctagttccaaacactgctgcaagta |
14320605 |
T |
|
| Q |
315 |
cagacacaccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactg |
393 |
Q |
| |
|
| || | |||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
14320606 |
ctgatagaccaacatagctgtacataagagccaatgcagcaccaacttgcaatggcatcaaccatataggatgaaactg |
14320684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 64 - 389
Target Start/End: Original strand, 25885037 - 25885362
Alignment:
| Q |
64 |
gttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaac |
163 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
25885037 |
gttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattcacgaaactgtttaatcttgttaccgaaatactcttcccaagcttgaaac |
25885136 |
T |
|
| Q |
164 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattactactctttgttc |
263 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||| |||||||||||||| | ||||||||||| |||| |
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|
| T |
25885137 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaagttgttactactcttggttc |
25885236 |
T |
|
| Q |
264 |
gatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacaccaacatagctatacaaaagaaacaatgcagcggaaacttg |
363 |
Q |
| |
|
||||||| | || | | | || ||| | | ||||| | || ||| | || || ||||||||||||||||||| |||| |||||| | | ||||| |
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|
| T |
25885237 |
gatatagcgcgaaaagaaacactatgctagttccaagcaatgctgcaagtactgatacaccaacatagctatacataagagccaatgccacagctacttg |
25885336 |
T |
|
| Q |
364 |
caatggcatcaaccatataggatgaa |
389 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
25885337 |
caatggcatcaaccatatagggtgaa |
25885362 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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