View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_low_12 (Length: 388)

Name: NF19189_low_12
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_low_12
NF19189_low_12
[»] chr1 (7 HSPs)
chr1 (9-370)||(47636300-47636661)
chr1 (23-161)||(47287585-47287723)
chr1 (55-161)||(47574592-47574698)
chr1 (55-133)||(47607328-47607406)
chr1 (131-196)||(47568239-47568304)
chr1 (58-215)||(47711620-47711777)
chr1 (31-179)||(6497761-6497909)
[»] chr4 (4 HSPs)
chr4 (52-128)||(36290572-36290648)
chr4 (105-191)||(36376261-36376347)
chr4 (105-191)||(36429306-36429392)
chr4 (126-182)||(36389512-36389568)
[»] chr2 (4 HSPs)
chr2 (55-101)||(2712576-2712622)
chr2 (55-101)||(2717100-2717146)
chr2 (55-101)||(2723722-2723768)
chr2 (55-131)||(2698501-2698577)
[»] chr5 (3 HSPs)
chr5 (51-128)||(454539-454616)
chr5 (142-179)||(28419879-28419916)
chr5 (142-179)||(28433112-28433149)
[»] chr3 (1 HSPs)
chr3 (92-197)||(36067108-36067213)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 47636661 - 47636300
Alignment:
Q  9 gattatactggtatttccttgagtttgatccactccgaataattttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttg 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636661 gattctactggtatttccttgagtttgatccactccgaataattttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttg 47636562  T
Q  109 ctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataatcttgtaacgccttgtcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47636561 ctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgcgcaatccctccaataatcttgtaacgccttgtcc 47636462  T
Q  209 aatccaacagcctttgtttttcaggatctgaataaattttctattcataagactatgatccccgataaaagtaaaccagtttaatgaaacagaaatttga 308  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636461 aatccaacagcctttgtttttcaggatctgcataaattttctattcataagactatgatccccgataaaagtaaaccagtttaatgaaacagaaatttga 47636362  T
Q  309 caaaagaattcaattgcacagttttctcatgtgaagtgtgcactataaagagttcagataag 370  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47636361 caaaagaattcaattgtacagttttctcatgtgaagtgtgcactataaagagttcagataag 47636300  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 47287723 - 47287585
Alignment:
Q  23 ttccttgagtttgatccactccgaataattttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatc 122  Q
    ||||| |||||||||| || || |||| | ||||||| ||||| || || ||||| ||||| | ||   |||| || ||||| || ||||||||||||||    
T  47287723 ttcctcgagtttgatcaacaccaaatattcttgccatcccaaaatctgaaattttgggatttaaattctcatctaataatatattactagctttaagatc 47287624  T
Q  123 acgatgaataattttaagcctagaatcttcatgaagata 161  Q
     ||||| || ||| |||| | ||||||||| ||||||||    
T  47287623 gcgatgtatgattctaagtcgagaatcttcgtgaagata 47287585  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 47574698 - 47574592
Alignment:
Q  55 gccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcat 154  Q
    ||||||||||| || || ||||||||||||||||  ||||| ||||  |  | ||||| ||| ||||||||||| || ||||| || | |||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgagaatcttcat 47574599  T
Q  155 gaagata 161  Q
    | |||||    
T  47574598 ggagata 47574592  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 47607406 - 47607328
Alignment:
Q  55 gccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaataa 133  Q
    ||||||||||| || |||||||| |||||||||| | |||| || || || || |||| ||||||||||||||| ||||    
T  47607406 gccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataa 47607328  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 47568304 - 47568239
Alignment:
Q  131 taattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataatcttgt 196  Q
    |||||||||| |  ||||| ||||| |||||  |||| ||||||||||| ||||||||||||||||    
T  47568304 taattttaaggcgtgaatcctcatggagataaagaattcctcgagcaattcctccaataatcttgt 47568239  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 47711620 - 47711777
Alignment:
Q  58 atgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaa 157  Q
    ||||||||||| || ||||| |||||||  | | ||||||| |  ||||| || ||||||||||||||||| |||||   |||   |||||| |||||||    
T  47711620 atgccaaagtctgatattttaggattcaacttttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaa 47711719  T
Q  158 gatattgaatgcctcgagcaatccctccaataatcttgtaacgccttgtccaatccaa 215  Q
    | ||  ||| ||||| ||| || |||||||| || ||||| ||||||  |||||||||    
T  47711720 ggtaaagaaggcctctagctatacctccaatgattttgtagcgcctttcccaatccaa 47711777  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 6497761 - 6497909
Alignment:
Q  31 gtttgatccactccgaataattttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaa 130  Q
    ||||| ||||| || |||| | ||||||||||||| || || || || |||||||| ||| |||| || |  ||||| || ||||| |||||||||||||    
T  6497761 gtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaa 6497860  T
Q  131 taattttaagcctagaatcttcatgaagatattgaatgcctcgagcaat 179  Q
    ||||    || | |||||| || ||||| ||  ||||||||||||||||    
T  6497861 taatgcgcagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaat 6497909  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 36290648 - 36290572
Alignment:
Q  52 tttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 128  Q
    ||||||| ||||||||| || |||||||||||||||| | |||||||||| |||||||| ||||| ||||| |||||    
T  36290648 tttgccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatg 36290572  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 36376347 - 36376261
Alignment:
Q  105 gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat 191  Q
    |||||| ||||| ||||| | |||||| ||||| ||||| ||||||| ||||||||||  ||  |||||||||||||| | ||||||    
T  36376347 gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 36376261  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 36429392 - 36429306
Alignment:
Q  105 gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat 191  Q
    |||||| ||||| ||||| | |||||| ||||| ||||| ||||||| ||||||||||  ||  |||||||||||||| | ||||||    
T  36429392 gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 36429306  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 36389568 - 36389512
Alignment:
Q  126 atgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccc 182  Q
    |||||| ||||| ||||| ||||||| ||||||||||  || |||||||||||||||    
T  36389568 atgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatccc 36389512  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 2712576 - 2712622
Alignment:
Q  55 gccatgccaaagtccgagatttttggattcatatctccatccaacaa 101  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||    
T  2712576 gccatgccaaagtcagatatttttggattcatttctccatccaacaa 2712622  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 2717100 - 2717146
Alignment:
Q  55 gccatgccaaagtccgagatttttggattcatatctccatccaacaa 101  Q
    |||||||||||||| || |||||||||||||  ||||||||||||||    
T  2717100 gccatgccaaagtcggatatttttggattcagttctccatccaacaa 2717146  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 2723722 - 2723768
Alignment:
Q  55 gccatgccaaagtccgagatttttggattcatatctccatccaacaa 101  Q
    |||||||||||||| || |||||||||||||  ||||||||||||||    
T  2723722 gccatgccaaagtcggatatttttggattcagttctccatccaacaa 2723768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 2698501 - 2698577
Alignment:
Q  55 gccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaat 131  Q
    |||| ||||||||| || |||||||||||||| | | |||| ||||| ||||| || ||||| ||||| ||||||||    
T  2698501 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttgcttttagatctcgatgaat 2698577  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 454539 - 454616
Alignment:
Q  51 ttttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 128  Q
    ||||||||| |||||||| || ||||||||||||||||    ||| |||||||| ||||||| ||| |||||||||||    
T  454539 ttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 454616  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 28419916 - 28419879
Alignment:
Q  142 ctagaatcttcatgaagatattgaatgcctcgagcaat 179  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28419916 ctagaatcttgatgaagatattgaattcctcgagcaat 28419879  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 28433149 - 28433112
Alignment:
Q  142 ctagaatcttcatgaagatattgaatgcctcgagcaat 179  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28433149 ctagaatcttgatgaagatattgaattcctcgagcaat 28433112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 36067108 - 36067213
Alignment:
Q  92 catccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat 191  Q
    |||||||||| |||||||| | |||||||||||  || || ||||| ||   |||||| ||||| |||||  |||| ||||| ||||||||||  |||||    
T  36067108 catccaacaaaatgttgctgggtttaagatcacagtgtatgatttttagatgagaatcctcatgtagataaagaatacctcgtgcaatccctcttataat 36067207  T
Q  192 cttgta 197  Q
    ||||||    
T  36067208 cttgta 36067213  T

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