View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_low_14 (Length: 360)

Name: NF19189_low_14
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_low_14
NF19189_low_14
[»] chr6 (17 HSPs)
chr6 (1-342)||(14589330-14589671)
chr6 (1-342)||(14622988-14623329)
chr6 (1-123)||(33123017-33123139)
chr6 (147-303)||(12846924-12847080)
chr6 (1-118)||(7632781-7632898)
chr6 (1-135)||(7632782-7632916)
chr6 (1-119)||(26388201-26388319)
chr6 (1-100)||(29938628-29938726)
chr6 (10-135)||(3989531-3989656)
chr6 (1-118)||(14589555-14589672)
chr6 (1-134)||(26388203-26388336)
chr6 (1-118)||(33123023-33123140)
chr6 (1-115)||(3989524-3989638)
chr6 (8-118)||(29938627-29938736)
chr6 (1-118)||(14623213-14623330)
chr6 (78-123)||(30629597-30629642)
chr6 (79-135)||(32124214-32124270)
[»] chr4 (27 HSPs)
chr4 (138-304)||(29954945-29955111)
chr4 (136-342)||(51369340-51369546)
chr4 (1-137)||(22720498-22720634)
chr4 (3-137)||(22768136-22768270)
chr4 (1-135)||(52673592-52673726)
chr4 (1-134)||(22720518-22720651)
chr4 (1-136)||(52673610-52673745)
chr4 (70-135)||(2198042-2198107)
chr4 (21-134)||(22768176-22768289)
chr4 (51-116)||(41622159-41622224)
chr4 (67-134)||(22923654-22923721)
chr4 (67-134)||(22928307-22928374)
chr4 (67-134)||(22984586-22984653)
chr4 (67-134)||(22998174-22998241)
chr4 (63-134)||(44626157-44626228)
chr4 (2-98)||(41622128-41622224)
chr4 (64-137)||(5970275-5970348)
chr4 (66-118)||(39396832-39396884)
chr4 (65-124)||(49083047-49083105)
chr4 (51-93)||(15794800-15794842)
chr4 (65-134)||(52299073-52299141)
chr4 (85-137)||(22923712-22923764)
chr4 (85-137)||(22928365-22928417)
chr4 (85-137)||(22984644-22984696)
chr4 (85-137)||(22998232-22998284)
chr4 (65-125)||(34016165-34016224)
chr4 (78-134)||(35884418-35884474)
[»] chr3 (10 HSPs)
chr3 (156-305)||(11532257-11532406)
chr3 (18-138)||(35239682-35239802)
chr3 (20-127)||(50334923-50335030)
chr3 (26-134)||(32186884-32186992)
chr3 (1-100)||(29497372-29497471)
chr3 (71-135)||(36344518-36344582)
chr3 (1-43)||(50334933-50334975)
chr3 (70-135)||(1779488-1779553)
chr3 (64-100)||(379152-379188)
chr3 (18-118)||(29497371-29497471)
[»] chr2 (10 HSPs)
chr2 (139-343)||(20493041-20493245)
chr2 (202-301)||(1355412-1355511)
chr2 (28-136)||(8996792-8996900)
chr2 (202-301)||(1362298-1362397)
chr2 (77-134)||(43100744-43100801)
chr2 (67-125)||(10495722-10495780)
chr2 (63-118)||(8996734-8996789)
chr2 (85-134)||(13953862-13953911)
chr2 (85-134)||(14095069-14095118)
chr2 (63-135)||(20218620-20218692)
[»] chr5 (13 HSPs)
chr5 (3-131)||(26221022-26221150)
chr5 (1-119)||(21032544-21032662)
chr5 (1-125)||(42364224-42364348)
chr5 (2-137)||(42364233-42364368)
chr5 (20-134)||(5240221-5240335)
chr5 (1-123)||(21032538-21032660)
chr5 (18-127)||(29486500-29486609)
chr5 (1-118)||(29486510-29486627)
chr5 (20-98)||(5240257-5240335)
chr5 (53-134)||(12959939-12960022)
chr5 (1-108)||(26221036-26221143)
chr5 (63-128)||(27895898-27895963)
chr5 (70-118)||(892562-892610)
[»] chr8 (9 HSPs)
chr8 (1-134)||(6197821-6197954)
chr8 (67-125)||(43140626-43140683)
chr8 (10-135)||(13325116-13325237)
chr8 (61-125)||(43140550-43140614)
chr8 (69-136)||(28205791-28205858)
chr8 (16-134)||(11322589-11322706)
chr8 (20-88)||(27939032-27939100)
chr8 (65-108)||(13325116-13325159)
chr8 (63-109)||(158447-158493)
[»] chr7 (16 HSPs)
chr7 (1-135)||(4132380-4132515)
chr7 (20-137)||(4132418-4132535)
chr7 (70-135)||(26982758-26982823)
chr7 (65-134)||(21857064-21857133)
chr7 (70-137)||(34840606-34840673)
chr7 (70-123)||(43250420-43250473)
chr7 (67-135)||(24155635-24155703)
chr7 (77-137)||(38646255-38646315)
chr7 (63-126)||(11602841-11602904)
chr7 (67-125)||(21587839-21587897)
chr7 (1-43)||(26982776-26982818)
chr7 (1-123)||(41115556-41115678)
chr7 (64-100)||(7107709-7107745)
chr7 (65-125)||(21857162-21857222)
chr7 (64-100)||(29770401-29770437)
chr7 (80-124)||(43250374-43250418)
[»] chr1 (10 HSPs)
chr1 (4-134)||(26468289-26468419)
chr1 (1-135)||(8352129-8352263)
chr1 (1-123)||(8352147-8352269)
chr1 (20-118)||(14773754-14773852)
chr1 (26-128)||(43731156-43731258)
chr1 (69-135)||(5368854-5368920)
chr1 (9-115)||(31635765-31635871)
chr1 (10-108)||(31635766-31635864)
chr1 (69-122)||(30800289-30800342)
chr1 (63-139)||(38834601-38834677)
[»] scaffold0155 (1 HSPs)
scaffold0155 (85-134)||(33971-34020)
[»] scaffold0007 (1 HSPs)
scaffold0007 (64-100)||(77378-77414)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 14589671 - 14589330
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||||||||||| ||||||| ||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14589671 attataaataaaactttactttttagatacattgaataatcaatctgtccggtctataataaagactagatacatgaattattcaatgtatctgaaaagt 14589572  T
Q  101 gaagttttgtttataataatgaccgaagggagtatatgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589571 gaagttttgtttataataatgaccgaagggagtatatgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaat 14589472  T
Q  201 gtattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589471 gtattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaat 14589372  T
Q  301 gttttagcaacacaatccctattaatggccccatctggctca 342  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  14589371 gttttagcaacacagtccctattaatggccccatctggctca 14589330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 14623329 - 14622988
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14623329 attataaataaaacttcactttttagatacattgaaaaattaatctgttcagtctataataaagattagatacatgaattattcaatgtatctgaaaagt 14623230  T
Q  101 gaagttttgtttataataatgaccgaagggagtatatgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaat 200  Q
    ||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14623229 gaagttttgcttataataatgaccgaatgaagtatatgaaatatgtttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaat 14623130  T
Q  201 gtattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14623129 gtattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaat 14623030  T
Q  301 gttttagcaacacaatccctattaatggccccatctggctca 342  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  14623029 gttttagcaacacagtccctattaatggccccatctggctca 14622988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 33123139 - 33123017
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||| || ||||||| |||||| | |||||||||  | || ||||||||  ||||||||||||||| ||||||||||||||| | ||||||    
T  33123139 attataagcaaaagtttactttttagatacacttaataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtatttaaaaagt 33123040  T
Q  101 gaagttttgtttataataatgac 123  Q
    |||||||||||||||||||||||    
T  33123039 gaagttttgtttataataatgac 33123017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 303
Target Start/End: Complemental strand, 12847080 - 12846924
Alignment:
Q  147 ttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatttct 246  Q
    |||||| || |||||||| ||| ||||||||||||  |||||||| | || ||||||||  |||||||| ||||||||||| | || ||| ||||| |||    
T  12847080 ttaattctcagaatgaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctct 12846981  T
Q  247 ttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgtt 303  Q
    || || ||||||||||||||| |||||||  |||||| |||| | ||||||||||||    
T  12846980 tttgcattgttcctgtaaataattccttcggcatccattattgctaacctcaatgtt 12846924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 7632898 - 7632781
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| ||||||| ||||||| |||||| |||||||||||  | ||| ||||||| ||||||||||||||||  |||||| ||||||  |  |||||    
T  7632898 attataaacaaaacttaactttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattattgaatgtagttagaaagt 7632799  T
Q  101 gaagttttgtttataata 118  Q
    ||||||||||||||||||    
T  7632798 gaagttttgtttataata 7632781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 7632782 - 7632916
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| ||||||||||||| |   |||||| |||||| ||  | || ||||| || || ||||  ||||||| ||||||||| ||||||| ||||||    
T  7632782 attataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatctaaaaagt 7632881  T
Q  101 gaagttttgtttataataatgaccgaagggagtat 135  Q
     |||||||||||||||||||||||| |||||||||    
T  7632882 taagttttgtttataataatgaccggagggagtat 7632916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26388319 - 26388201
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||||| ||||||||  ||| |||||||||||||  | | ||||||||| |||||| ||||||||| ||||||||||| ||||| ||||||    
T  26388319 attataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattattcaatatatctaaaaagt 26388220  T
Q  101 gaagttttgtttataataa 119  Q
      |||||||||||||||||    
T  26388219 agagttttgtttataataa 26388201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29938628 - 29938726
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    ||||||| ||||| |||||||||| |||||||| |||||||||  | || ||| || | |||||||||||||||| ||||||||||||||||| ||||||    
T  29938628 attataagtaaaatttcactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaaaaagt 29938726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 3989531 - 3989656
Alignment:
Q  10 aaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttg 109  Q
    |||||||||||||||  ||||||  |||||| ||  | || ||||| || || ||||||||||||| ||||||||||||||||| || ||| ||||||||    
T  3989531 aaaacttcactttttaaatacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtatcttaatagttaagttttg 3989630  T
Q  110 tttataataatgaccgaagggagtat 135  Q
     |||||||| || ||| || ||||||    
T  3989631 attataatagtggccggagcgagtat 3989656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 14589555 - 14589672
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| ||||||||||||||  |||||||||||||||| |  | || ||||| || || ||||  || | ||  |||||||||||||||| ||||||    
T  14589555 attataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttattatagaccggacagattgattattcaatgtatctaaaaagt 14589654  T
Q  101 gaagttttgtttataata 118  Q
     ||||||| |||||||||    
T  14589655 aaagttttatttataata 14589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26388203 - 26388336
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| ||||||  ||||||| |||| |||||||||||||  | || | ||| || || |||||  |||||| ||||||||||| ||| | ||||||    
T  26388203 attataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaagt 26388302  T
Q  101 gaagttttgtttataataatgaccgaagggagta 134  Q
    | ||||||  |||||||| |||||| ||||||||    
T  26388303 ggagtttttcttataatagtgaccggagggagta 26388336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33123023 - 33123140
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| |||||||||||||||  |||||||||||||||||  | || ||||| |  || ||||| ||||| | ||||||| | ||||||| ||||||    
T  33123023 attataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatctaaaaagt 33123122  T
Q  101 gaagttttgtttataata 118  Q
     || ||||| ||||||||    
T  33123123 aaacttttgcttataata 33123140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 3989638 - 3989524
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  ||||||| ||| ||  |||||||||||||||| |  | || |||||||| ||||||||||| ||||  ||||||  |||||| | ||||||    
T  3989638 attataatcaaaacttaactattaagatacattgaataattgatgtatctagtctataataaagactagaaacattgattattttatgtatttaaaaagt 3989539  T
Q  101 gaagttttgtttata 115  Q
    ||||||||| |||||    
T  3989538 gaagttttgcttata 3989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 29938736 - 29938627
Alignment:
Q  8 ataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttt 107  Q
    ||||||||  ||||||| ||||||||||||||||||  | || ||||| || |  | ||||||||||| ||||||| ||||||||| ||||||||| |||    
T  29938736 ataaaactctactttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaattt 29938638  T
Q  108 tgtttataata 118  Q
    |  ||||||||    
T  29938637 tacttataata 29938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 14623213 - 14623330
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  ||||||||||||||  |||||||||||||||| |  | || | ||| || || |||||  | | || |||| |||||||||||| ||||||    
T  14623213 attataagcaaaacttcacttttcagatacattgaataattcatgtatctaatctttattatagactgaacagattaatttttcaatgtatctaaaaagt 14623312  T
Q  101 gaagttttgtttataata 118  Q
    |||||||| |||||||||    
T  14623313 gaagttttatttataata 14623330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 30629642 - 30629597
Alignment:
Q  78 attattcaatgtatctgaaaagtgaagttttgtttataataatgac 123  Q
    |||||||||| ||||| ||||||||| |||||||||||||| ||||    
T  30629642 attattcaatctatctaaaaagtgaaattttgtttataatagtgac 30629597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 32124214 - 32124270
Alignment:
Q  79 ttattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    ||||| |||| |||| |||||| || ||||| |||||||||||||||||| ||||||    
T  32124214 ttattgaatgaatctaaaaagtcaatttttgcttataataatgaccgaagagagtat 32124270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 138 - 304
Target Start/End: Complemental strand, 29955111 - 29954945
Alignment:
Q  138 gaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaaccttt 237  Q
    |||||||||||||||| |  || |||||||| ||||||||||||  |||||||  | ||||||||||||||||||||||||||||||||| | |||||||    
T  29955111 gaaatatgcttaattgacataacgaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttt 29955012  T
Q  238 cccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttt 304  Q
     |||| |||||||| || ||||  || |||||||||||||||||||||||| |||||||||||||||    
T  29955011 tccatatctttggcattattccgatacatacttccttcctcatccactattgccaacctcaatgttt 29954945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 342
Target Start/End: Original strand, 51369340 - 51369546
Alignment:
Q  136 atgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacct 235  Q
    ||||||||||||||| |||||||||||||||||  |||||||||||  || || || | ||||||||||| ||||||||||||||||||||| | ||  |    
T  51369340 atgaaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaattt 51369439  T
Q  236 ttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggccccatc 335  Q
    ||||||| ||||| || || |||||| |  | || ||||||||||||||||||||||||||||||||||| || ||| | |||||| ||| || ||||||    
T  51369440 ttcccatatctttagcatttttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatc 51369539  T
Q  336 tggctca 342  Q
    | |||||    
T  51369540 ttgctca 51369546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22720634 - 22720498
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||||| |||||||| ||||||||||||||||||  | | ||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  22720634 attataagcaaaactccactttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattattcaatgtatctaaaaagt 22720535  T
Q  101 gaagttttgtttataataatgaccgaagggagtatat 137  Q
    | | |||||||||||||| |||| | ||||| |||||    
T  22720534 ggaattttgtttataatagtgacgggagggactatat 22720498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 22768270 - 22768136
Alignment:
Q  3 tataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtga 102  Q
    |||||| || ||| |||||||| ||||||||||||||||||    | ||||||||| |||||||||||||||| ||||||||||||||||| |||  ||     
T  22768270 tataaacaacactacactttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattattcaatgtatctaaaatatgg 22768171  T
Q  103 agttttgtttataataatgaccgaagggagtatat 137  Q
    ||||||| |||||||| |||||| |||||| ||||    
T  22768170 agttttgcttataatagtgaccggagggagcatat 22768136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 52673726 - 52673592
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||| |||||||||| ||||||||||||||||||  | ||||  ||||| |||| ||||||||||| ||||||||||| ||||| ||||||    
T  52673726 attataagcaaaatttcactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaattattcaatatatctaaaaagt 52673627  T
Q  101 gaagttttgtttataataatgaccgaagggagtat 135  Q
     |||||||| |||||||| |||| | |||||||||    
T  52673626 aaagttttgcttataatagtgacgggagggagtat 52673592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 22720518 - 22720651
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| |||| | |||||||| ||||||||||||||||||  | || ||||| || || |||||  |||||| ||||||||||||||||| ||||||    
T  22720518 attataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaattattcaatgtatctaaaaagt 22720617  T
Q  101 gaagttttgtttataataatgaccgaagggagta 134  Q
    | ||||||| |||||||| |||||| ||||||||    
T  22720618 ggagttttgcttataatagtgaccggagggagta 22720651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 52673610 - 52673745
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  ||||||| ||||||| |||| |||||||||||||  | || ||| | || || ||  | ||||||| ||||||||||||||||| ||||||    
T  52673610 attataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatagtatggatacattaattattcaatgtatctaaaaagt 52673709  T
Q  101 gaagttttgtttataataatgaccgaagggagtata 136  Q
    ||| ||||| |||||||| ||||||||  |||||||    
T  52673710 gaaattttgcttataatagtgaccgaaatgagtata 52673745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 2198107 - 2198042
Alignment:
Q  70 atacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    |||||| ||||||||||||||||| ||||||| ||||||| |||||||| |||||| |||||||||    
T  2198107 atacattaattattcaatgtatctaaaaagtggagttttgcttataatagtgaccggagggagtat 2198042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 22768176 - 22768289
Alignment:
Q  21 ttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataat 120  Q
    |||| ||||||||||||||||||  | || ||||| || || |||||  || ||| ||||||||||||||||| ||||||| ||| ||||||||| || |    
T  22768176 ttttagatacattgaataattaatgtatctagtctttattatagactgcattcattaattattcaatgtatctaaaaagtgtagtgttgtttatagtagt 22768275  T
Q  121 gaccgaagggagta 134  Q
    ||||| ||||||||    
T  22768276 gaccggagggagta 22768289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 41622159 - 41622224
Alignment:
Q  51 agtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataa 116  Q
    |||||||| |||||||||||||||| ||| ||||||||||||| ||||||||| |||| |||||||    
T  41622159 agtctataataaagactagatacattaatcattcaatgtatctaaaaagtgaacttttatttataa 41622224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 22923721 - 22923654
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||| ||||||||||||||||| |||| || ||||||| |||||||| |||||| ||||||||    
T  22923721 tagatacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22923654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 22928374 - 22928307
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||| ||||||||||||||||| |||| || ||||||| |||||||| |||||| ||||||||    
T  22928374 tagatacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22928307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 22984653 - 22984586
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||| ||||||||||||||||| |||| || ||||||| |||||||| |||||| ||||||||    
T  22984653 tagatacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22984586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 22998241 - 22998174
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||| ||||||||||||||||| |||| || ||||||| |||||||| |||||| ||||||||    
T  22998241 tagatacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22998174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 44626228 - 44626157
Alignment:
Q  63 agactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||||||| | |||||||||||||||||||| | || ||||| |||||||| |||||| ||||||||    
T  44626228 agactagatacattagttattcaatgtatctgaaaaataaaattttgattataatagtgaccggagggagta 44626157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 41622224 - 41622128
Alignment:
Q  2 ttataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaa 98  Q
    |||||||||||| |||||||||| |||||||||||| |||||  | || ||||| || || ||||||  ||||  ||||||||||||||||| ||||    
T  41622224 ttataaataaaagttcactttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaa 41622128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 5970348 - 5970275
Alignment:
Q  64 gactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatat 137  Q
    ||||||||||||  |||||||||||||||| |||||| || |||  |||||||  | |||||||||||||||||    
T  5970348 gactagatacatacattattcaatgtatctaaaaagtcaactttcttttataaataggaccgaagggagtatat 5970275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 39396884 - 39396832
Alignment:
Q  66 ctagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataata 118  Q
    |||||||||| |||||| | |||||| | ||||||||||||||||||||||||    
T  39396884 ctagatacattaattatcccatgtatttaaaaagtgaagttttgtttataata 39396832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 49083105 - 49083047
Alignment:
Q  65 actagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgacc 124  Q
    ||||||||||| |||||||||||| |||| |||| |||||||||| |||||||| |||||    
T  49083105 actagatacattaattattcaatgcatct-aaaaatgaagttttgcttataatagtgacc 49083047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 15794842 - 15794800
Alignment:
Q  51 agtctatactaaagactagatacatgaattattcaatgtatct 93  Q
    |||||||| ||||||| |||||||| |||||||||||||||||    
T  15794842 agtctataataaagaccagatacattaattattcaatgtatct 15794800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 52299141 - 52299073
Alignment:
Q  65 actagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    |||| |||||| ||||||||||||||| | |||||| || ||||| ||||||||||||| |||| |||||    
T  52299141 actaaatacattaattattcaatgtat-taaaaagtaaaattttgcttataataatgacggaagagagta 52299073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 22923712 - 22923764
Alignment:
Q  85 aatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatat 137  Q
    ||||||||| |||| || | |||||||||||||| |||||| |||||||||||    
T  22923712 aatgtatctaaaaaatggaattttgtttataatagtgaccggagggagtatat 22923764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 22928365 - 22928417
Alignment:
Q  85 aatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatat 137  Q
    ||||||||| |||| || | |||||||||||||| |||||| |||||||||||    
T  22928365 aatgtatctaaaaaatggaattttgtttataatagtgaccggagggagtatat 22928417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 22984644 - 22984696
Alignment:
Q  85 aatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatat 137  Q
    ||||||||| |||| || | |||||||||||||| |||||| |||||||||||    
T  22984644 aatgtatctaaaaaatggaattttgtttataatagtgaccggagggagtatat 22984696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 22998232 - 22998284
Alignment:
Q  85 aatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatat 137  Q
    ||||||||| |||| || | |||||||||||||| |||||| |||||||||||    
T  22998232 aatgtatctaaaaaatggaattttgtttataatagtgaccggagggagtatat 22998284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 34016224 - 34016165
Alignment:
Q  65 actagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    |||||||||||||||| ||||||||||||||||||  ||  ||||| ||||||| ||||||    
T  34016224 actagatacatgaatt-ttcaatgtatctgaaaagataatatttgtctataatagtgaccg 34016165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 35884418 - 35884474
Alignment:
Q  78 attattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    |||||||||||||||| |||||| ||  ||||||||||||| |||||| | ||||||    
T  35884418 attattcaatgtatctaaaaagtcaaagtttgtttataatagtgaccggaaggagta 35884474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 11532406 - 11532257
Alignment:
Q  156 ggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttg 255  Q
    ||||||||||||| ||||||||||||   |||| || | || |||||||| ||||||||||||||||||||| | |||||||||||| |||||||| |||    
T  11532406 ggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggcattg 11532307  T
Q  256 ttcctgtaaatacttccttcctcatccactattaccaacctcaatgtttt 305  Q
    || |||||  |||||||||||||||||| |||||||||||||||||||||    
T  11532306 tttctgtacgtacttccttcctcatccattattaccaacctcaatgtttt 11532257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 35239682 - 35239802
Alignment:
Q  18 actttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataat 117  Q
    ||||||| ||||||||||||||||||  | |  |||||||| |||||||||||||||| || |||||||||||||| ||| || || ||||| |||||||    
T  35239682 actttttagatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatctaaaatgtcaaattttggttataat 35239781  T
Q  118 aatgaccgaagggagtatatg 138  Q
    | ||||||||  |||||||||    
T  35239782 agtgaccgaacagagtatatg 35239802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 50335030 - 50334923
Alignment:
Q  20 tttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataa 119  Q
    ||||| |||| |||||||||||||  | | ||  ||||| |||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||||||||     
T  50335030 tttttagatatattgaataattaatgtatacaacctataataaagattagatacattaattattcaatgtatctaaaatgtgaagttttgtttataatat 50334931  T
Q  120 tgaccgaa 127  Q
    | ||||||    
T  50334930 taaccgaa 50334923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 32186992 - 32186884
Alignment:
Q  26 gatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    ||||||||| ||||||||  | || ||| |||| ||||||||| |||||| |||||||| |||||| | ||||||||| |||||||||||| | ||||||    
T  32186992 gatacattggataattaatgtatctagtttataataaagactatatacattaattattccatgtatttaaaaagtgaaattttgtttataacagtgaccg 32186893  T
Q  126 aagggagta 134  Q
     || |||||    
T  32186892 gagagagta 32186884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29497372 - 29497471
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||| || ||||||| |||||||||| |||||||  | | ||||||| | ||||||||||||| || |||| |||||||||||| ||||||    
T  29497372 attataagcaaaattttactttttagatacattgactaattaatgtattcagtctacaataaagactagatatattaattgttcaatgtatctaaaaagt 29497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 36344518 - 36344582
Alignment:
Q  71 tacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    ||||| ||||||||||||||||| ||||||  | |||||||||||||| ||| || |||||||||    
T  36344518 tacattaattattcaatgtatctaaaaagtataattttgtttataatattgatcggagggagtat 36344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 50334933 - 50334975
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaa 43  Q
    |||||||| |||||||||| |||| ||||||||||||||||||    
T  50334933 attataaacaaaacttcacattttagatacattgaataattaa 50334975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 1779553 - 1779488
Alignment:
Q  70 atacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    |||||| |||||||||||||| || |||||| | |||||||||||||   |||||| |||||||||    
T  1779553 atacatcaattattcaatgtacctaaaaagttatgttttgtttataaatgtgaccggagggagtat 1779488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 379152 - 379188
Alignment:
Q  64 gactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  379152 gactagatacataaattattcaatgtatctaaaaagt 379188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 29497471 - 29497371
Alignment:
Q  18 actttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataat 117  Q
    ||||||| ||||||||||| ||||||  | || ||||| || |  |||||  |||||| ||||| ||||||||||| |||||| || ||||| |||||||    
T  29497471 actttttagatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaattttgcttataat 29497372  T
Q  118 a 118  Q
    |    
T  29497371 a 29497371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 139 - 343
Target Start/End: Complemental strand, 20493245 - 20493041
Alignment:
Q  139 aaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacctttc 238  Q
    |||||||||||||||| |||||||||||||   ||||| ||||   |||||||   ||||||||||||||||||||||||||||||||  | || |||||    
T  20493245 aaatatgcttaattgttggaatgaactctatgtttttggagagcatcaatgaaacctttaatgtattcattgtgaagatcttttgaaccgaaaatctttc 20493146  T
Q  239 ccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctgg 338  Q
    |||| |||||||| || || || || |||||||||||||||||||||||| |||||||||||||||| || | | | |||||| ||| || ||||||| |    
T  20493145 ccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatgttttggctatagagtccctagtaaaggacccatcttg 20493046  T
Q  339 ctcat 343  Q
    |||||    
T  20493045 ctcat 20493041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 1355511 - 1355412
Alignment:
Q  202 tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatg 301  Q
    |||| |||||||| |||||||||||| | |||||| ||||  ||||| || ||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  1355511 tattgattgtgaatatcttttgaactgaaaaccttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg 1355412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 8996792 - 8996900
Alignment:
Q  28 tacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaa 127  Q
    ||||||||||||||||  | || |||||||| ||||||||| ||||||  ||||||||||||||||  |||||  ||||||| |||||||| |||||| |    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaagtagagttttgcttataatagtgaccgga 8996891  T
Q  128 gggagtata 136  Q
    | |||||||    
T  8996892 gagagtata 8996900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 1362397 - 1362298
Alignment:
Q  202 tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatg 301  Q
    |||| ||| |||| |||||||||||| | ||| || ||||  ||||| || ||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  1362397 tattgattatgaatatcttttgaactgaaaactttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg 1362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 43100801 - 43100744
Alignment:
Q  77 aattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||||||||||| |||| |||| ||||| |||||||| |||||||||||||||    
T  43100801 aattattcaatgtatctaaaaaatgaatttttgcttataatagtgaccgaagggagta 43100744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 10495722 - 10495780
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    ||||||||| || |||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  10495722 tagatacattaaatattcaatgtatctaaaaagtgaaattttgcttataatagtgaccg 10495780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 8996789 - 8996734
Alignment:
Q  63 agactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataata 118  Q
    ||||||||||||| ||||||||||||||||| ||||  ||| ||||| ||||||||    
T  8996789 agactagatacattaattattcaatgtatctaaaaaccgaaattttgcttataata 8996734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 13953862 - 13953911
Alignment:
Q  85 aatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||| ||| |||||||||||||||||||| |||||| | ||||||    
T  13953862 aatgtatctaaaatgtgaagttttgtttataatagtgaccggaaggagta 13953911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 14095069 - 14095118
Alignment:
Q  85 aatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||| ||| |||||||||||||||||||| |||||| | ||||||    
T  14095069 aatgtatctaaaatgtgaagttttgtttataatagtgaccggaaggagta 14095118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 20218620 - 20218692
Alignment:
Q  63 agactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    ||||| ||||||| |||||||||||| |||| ||||||||  | ||| |||||||| |||| | |||||||||    
T  20218620 agactggatacatcaattattcaatgaatctaaaaagtgatttcttgcttataatagtgacaggagggagtat 20218692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 26221150 - 26221022
Alignment:
Q  3 tataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtga 102  Q
    ||||| |||||||||||||||| |||||| |||||||||||  | | |  |||||| |||| ||||||||||| ||||||||||||||||| |||||| |    
T  26221150 tataagtaaaacttcactttttagatacactgaataattaatatataccatctataataaaaactagatacattaattattcaatgtatctaaaaagtaa 26221051  T
Q  103 agttttgtttataataatgaccgaaggga 131  Q
    |||||||||||||||| |||||| |||||    
T  26221050 agttttgtttataatattgaccggaggga 26221022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21032544 - 21032662
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||||| ||||||||  |||||||||||||||||  | | ||||||||| |||||||||||||||| ||||||||||| ||||| ||||||    
T  21032544 attataagcaaaactccactttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatctaaaaagt 21032643  T
Q  101 gaagttttgtttataataa 119  Q
      | |||||||||||||||    
T  21032644 agaattttgtttataataa 21032662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 42364348 - 42364224
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  ||||||||||||||| |||||||||||||||||   | || ||| |||| ||||||||| |||||| ||||||||||||||| | ||||||    
T  42364348 attataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaattattcaatgtatttaaaaagt 42364249  T
Q  101 gaagttttgtttataataatgaccg 125  Q
     || |||||||||||| | ||||||    
T  42364248 aaatttttgtttataacagtgaccg 42364224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 42364233 - 42364368
Alignment:
Q  2 ttataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtg 101  Q
    ||||||| |||| || |||||||  |||||||||||||||||  | |  ||||| || || | |||||||||   ||||||||||||||||| |||||||    
T  42364233 ttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatctaaaaagtg 42364332  T
Q  102 aagttttgtttataataatgaccgaagggagtatat 137  Q
    |||||||| |||||||| |||||| | |||||||||    
T  42364333 aagttttgcttataatagtgaccggaaggagtatat 42364368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 5240335 - 5240221
Alignment:
Q  20 tttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataa 119  Q
    ||||| ||||||||||||||||||  | || |  || || || | ||||||||||| ||||||||||||||||| |||| | || ||||| ||||||||     
T  5240335 tttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaattttgcttataatag 5240236  T
Q  120 tgaccgaagggagta 134  Q
    |||||| ||||||||    
T  5240235 tgaccggagggagta 5240221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 21032660 - 21032538
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| |||| |  ||||||| |||| |||||||||||||  | || ||||| || || |||||  |||||| ||||||||||||||| | ||||||    
T  21032660 attataaacaaaattctactttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaagt 21032561  T
Q  101 gaagttttgtttataataatgac 123  Q
    | ||||||| |||||||| ||||    
T  21032560 ggagttttgcttataatagtgac 21032538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 29486609 - 29486500
Alignment:
Q  18 actttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataat 117  Q
    ||||||| ||||||||||||||||||  | |  ||||| ||  | | ||||||||||| ||||||||||||||||| ||| ||||| ||||| |||||||    
T  29486609 actttttagatacattgaataattaatatatttagtctttatcataaactagatacattaattattcaatgtatctaaaatgtgaaattttgcttataat 29486510  T
Q  118 aatgaccgaa 127  Q
    | ||| ||||    
T  29486509 agtgatcgaa 29486500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29486510 - 29486627
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||| ||||| |||| ||||||||||||||||||  | || ||| |||  ||||||||| ||| || ||||||||||||||||| ||||||    
T  29486510 attataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaatgtatctaaaaagt 29486609  T
Q  101 gaagttttgtttataata 118  Q
     |  ||||| ||||||||    
T  29486610 cagattttgcttataata 29486627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 5240257 - 5240335
Alignment:
Q  20 tttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaa 98  Q
    ||||| ||||||||||||||||||  | || ||| |||| |||||  ||||||||| ||||||||||||||||| ||||    
T  5240257 tttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattattcaatgtatctaaaaa 5240335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 12960022 - 12959939
Alignment:
Q  53 tctatactaaagactagatacatgaatt--attcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    |||||| |||||||||||||||| ||||  ||||||| ||| | ||| ||||||||||||||| |||| | |||||| ||||||    
T  12960022 tctataataaagactagatacattaattttattcaatatatttaaaatgtgaagttttgtttacaatagtaaccgaatggagta 12959939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26221036 - 26221143
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||  | || ||| | || || |||    ||| || ||||||||| ||||||| ||||||    
T  26221036 attataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagatggtatatattaattattcagtgtatctaaaaagt 26221135  T
Q  101 gaagtttt 108  Q
    ||||||||    
T  26221136 gaagtttt 26221143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 27895963 - 27895898
Alignment:
Q  63 agactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaag 128  Q
    |||||| |||||| | ||||| |||| |||| |||| |||| |||||||||||||| |||||||||    
T  27895963 agactacatacatcatttattaaatgaatctaaaaaatgaacttttgtttataatagtgaccgaag 27895898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 892610 - 892562
Alignment:
Q  70 atacatgaattattcaatgtatctgaaaagtgaagttttgtttataata 118  Q
    |||||| |||||||||||| |||| ||||||||| ||||| ||||||||    
T  892610 atacattaattattcaatgaatctaaaaagtgaatttttgcttataata 892562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 6197954 - 6197821
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  ||||||| ||||||| |||||||| |||||||||  | |  | |||||  |||||||||||||||| || |||| ||||||||| ||||||    
T  6197954 attataagcaaaactttactttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactatttaatgtatctaaaaagt 6197855  T
Q  101 gaagttttgtttataataatgaccgaagggagta 134  Q
    | ||||||| ||||||||||||||| ||||||||    
T  6197854 ggagttttgcttataataatgaccggagggagta 6197821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 43140626 - 43140683
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  43140626 tagatacattaattattcaa-gtatctaaaaaatgaagttttgtttataataatgaccg 43140683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 13325116 - 13325237
Alignment:
Q  10 aaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttg 109  Q
    ||||||||| ||||| ||||||||||||||||||  | || ||| |||| ||    ||| ||||||  |||||||||| || || ||||||||||||||     
T  13325116 aaaacttcaatttttagatacattgaataattaatgtatctagtttataata----ctaaatacattgattattcaatatacctaaaaagtgaagttttc 13325211  T
Q  110 tttataataatgaccgaagggagtat 135  Q
     ||||||||||||| | |||||||||    
T  13325212 cttataataatgacaggagggagtat 13325237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 43140614 - 43140550
Alignment:
Q  61 aaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    ||||| ||||||||| ||||||||||||||||| | |||| | ||||||||||||||| ||||||    
T  43140614 aaagattagatacattaattattcaatgtatctaataagtaatgttttgtttataatagtgaccg 43140550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 28205858 - 28205791
Alignment:
Q  69 gatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtata 136  Q
    ||||||| |||||||||||||||||||||| | || ||||||||||||||   |||| ||||||||||    
T  28205858 gatacattaattattcaatgtatctgaaaaattaaattttgtttataatagcaaccggagggagtata 28205791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 11322589 - 11322706
Alignment:
Q  16 tcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttata 115  Q
    ||||||||| ||| ||||||||||||||  | |||  |||||| |||||| | |||| || ||||||||||| ||||| |||| || ||||||| |||||    
T  11322589 tcactttttagatgcattgaataattaatgtatccgatctataataaagattggatatattaattattcaatatatctaaaaattg-agttttgcttata 11322687  T
Q  116 ataatgaccgaagggagta 134  Q
    ||| ||| || ||||||||    
T  11322688 atagtgatcggagggagta 11322706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 27939100 - 27939032
Alignment:
Q  20 tttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatg 88  Q
    ||||| ||||||||||||||| ||  |  |||||||||| ||||||||||||||||  |||||||||||    
T  27939100 tttttagatacattgaataatgaatgtacccagtctataataaagactagatacattgattattcaatg 27939032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 13325159 - 13325116
Alignment:
Q  65 actagatacatgaattattcaatgtatctgaaaagtgaagtttt 108  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||    
T  13325159 actagatacattaattattcaatgtatctaaaaattgaagtttt 13325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 158493 - 158447
Alignment:
Q  63 agactagatacatgaattattcaatgtatctgaaaagtgaagttttg 109  Q
    |||||| |||||| ||||||||||||||||| ||||||||| |||||    
T  158493 agactacatacattaattattcaatgtatctaaaaagtgaaattttg 158447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 4132515 - 4132380
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatct-gaaaag 99  Q
    |||||||| ||||||| ||||||| ||||||||||||| ||||  | |  |||||||| |||| |||| |||||| |||||||||||||||||  |||||    
T  4132515 attataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaattattcaatgtatctaaaaaag 4132416  T
Q  100 tgaagttttgtttataataatgaccgaagggagtat 135  Q
    |||| ||||| |||||||| |||||| | |||||||    
T  4132415 tgaaattttgcttataatattgaccggatggagtat 4132380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 4132418 - 4132535
Alignment:
Q  20 tttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataa 119  Q
    ||||| ||||||||||||||||||  | |  ||| | || || |||||| |||||| || |||||||||||||| |||||| ||||||||||||||||||    
T  4132418 tttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaatattcaatgtatctaaaaagttaagttttgtttataataa 4132517  T
Q  120 tgaccgaagggagtatat 137  Q
    |||||  ||| |||||||    
T  4132518 tgaccagaggaagtatat 4132535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 26982823 - 26982758
Alignment:
Q  70 atacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |||||    
T  26982823 atacattaattattcaatgtatctaaaaagtgaagttttgcttataatagtgaccgaaggaagtat 26982758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 21857133 - 21857064
Alignment:
Q  65 actagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||||| ||||||||||||| ||| |||||| || ||||| |||||||| |||||| ||||||||    
T  21857133 actagatacattaattattcaatgtgtctaaaaagtaaacttttgcttataatagtgaccggagggagta 21857064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 34840673 - 34840606
Alignment:
Q  70 atacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatat 137  Q
    |||||| | ||||| |||| |||| ||||||||| ||||| ||||||||||||||| |||||||||||    
T  34840673 atacatcatttattgaatgaatctaaaaagtgaacttttgcttataataatgaccggagggagtatat 34840606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 43250420 - 43250473
Alignment:
Q  70 atacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgac 123  Q
    |||||| ||||||||||||||||| |||||| |||||||| |||||||| ||||    
T  43250420 atacattaattattcaatgtatctaaaaagtaaagttttgcttataatagtgac 43250473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 24155635 - 24155703
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    |||||| || ||||||| ||||||||| |||| ||||||||||||||| ||| |||  |||||||||||    
T  24155635 tagataaattaattatttaatgtatctaaaaattgaagttttgtttatgatagtgatagaagggagtat 24155703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 38646255 - 38646315
Alignment:
Q  77 aattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatat 137  Q
    ||||||||||| ||||| || |||||||||||| |||||||| |||||  |||||||||||    
T  38646255 aattattcaatatatctaaatagtgaagttttgcttataatagtgaccagagggagtatat 38646315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 11602841 - 11602904
Alignment:
Q  63 agactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccga 126  Q
    |||||| |||||| | ||||| |||| |||| ||||||||| |||||||||||||| |||||||    
T  11602841 agactacatacatcatttattgaatgaatctaaaaagtgaacttttgtttataatagtgaccga 11602904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 21587897 - 21587839
Alignment:
Q  67 tagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    ||||||||| ||||||| |||| ||||  |||||||||||||| |||||||| ||||||    
T  21587897 tagatacattaattatttaatgcatcttgaaagtgaagttttgcttataatagtgaccg 21587839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26982776 - 26982818
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaa 43  Q
    |||||||  ||||||||||||||| ||||||||||||||||||    
T  26982776 attataagcaaaacttcactttttagatacattgaataattaa 26982818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 41115678 - 41115556
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    ||||||| |||||||| | |||||  |||||||  ||||||||  | || | |||||| |||||| ||||||||| |||| ||||||||||||  |||||    
T  41115678 attataagtaaaacttaattttttatatacattacataattaatgtatctactctataataaagattagatacattaattgttcaatgtatctacaaagt 41115579  T
Q  101 gaagttttgtttataataatgac 123  Q
      ||||||  ||||||| |||||    
T  41115578 acagttttacttataatgatgac 41115556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 7107709 - 7107745
Alignment:
Q  64 gactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  7107709 gactagatacataaattattcaatgtatctaaaaagt 7107745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 21857162 - 21857222
Alignment:
Q  65 actagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    ||||||||||| ||||||||||| | ||| |||| |||| ||||| |||||||| ||||||    
T  21857162 actagatacattaattattcaatatgtctaaaaaatgaatttttgcttataatagtgaccg 21857222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 29770401 - 29770437
Alignment:
Q  64 gactagatacatgaattattcaatgtatctgaaaagt 100  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  29770401 gactagatacatgcattattcaatgtatctaaaaagt 29770437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 43250418 - 43250374
Alignment:
Q  80 tattcaatgtatctgaaaagtgaagttttgtttataataatgacc 124  Q
    |||||||||||||| |||||| |||||||| |||||||| |||||    
T  43250418 tattcaatgtatctaaaaagtaaagttttgcttataatagtgacc 43250374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 26468419 - 26468289
Alignment:
Q  4 ataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaa 103  Q
    |||| ||||| ||||||||||  ||||||||||||||| |  | |   ||||||| |||| | ||||||||| ||||||||||||||| | |||||||||    
T  26468419 ataagtaaaatttcactttttttatacattgaataattgatatatatggtctataataaaaattagatacattaattattcaatgtatttaaaaagtgaa 26468320  T
Q  104 gttttgtttataataatgaccgaagggagta 134  Q
     |||||||||||||| |||||||| ||||||    
T  26468319 attttgtttataatagtgaccgaatggagta 26468289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8352263 - 8352129
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  |||||||| |||||| |||| |||||||||||||  | |  | |||||| |||| | ||||||||| ||| ||||||||||||| |||| |    
T  8352263 attataagcaaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatcattcaatgtatctaaaaaat 8352164  T
Q  101 gaagttttgtttataataatgaccgaagggagtat 135  Q
    ||||||||| |||||||| |||||  |||||||||    
T  8352163 gaagttttgcttataatagtgaccagagggagtat 8352129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 8352147 - 8352269
Alignment:
Q  1 attataaataaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagt 100  Q
    |||||||  ||||||||| ||||| |||||||||||| |||||  | || | | | || || ||| || |||||| ||||||||||| ||||| |||||     
T  8352147 attataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattattcaatatatctaaaaagg 8352246  T
Q  101 gaagttttgtttataataatgac 123  Q
    ||||||||| |||||||||||||    
T  8352247 gaagttttgcttataataatgac 8352269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 14773754 - 14773852
Alignment:
Q  20 tttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataata 118  Q
    |||||| ||| ||||||||||||   | ||||||||||| || ||||||||||||| |||||| |||| ||||| |||||| || ||||| ||||||||    
T  14773754 tttttgaatatattgaataattattgtatccagtctataatacagactagatacattaattatacaatatatctaaaaagttaaattttgcttataata 14773852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 43731156 - 43731258
Alignment:
Q  26 gatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccg 125  Q
    |||||||| |||||||||  | || ||| | || |||| | ||||||||| || |||||||||||||| |||| |||| ||||| |||||||||| ||||    
T  43731156 gatacattcaataattaatgtatctagtttttattaaaaaatagatacattaactattcaatgtatctaaaaaatgaaattttgcttataataataaccg 43731255  T
Q  126 aag 128  Q
    |||    
T  43731256 aag 43731258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 5368854 - 5368920
Alignment:
Q  69 gatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtat 135  Q
    ||||||| |||||||||||| |||| |||||| || ||||| ||||||  ||||||| |||||||||    
T  5368854 gatacattaattattcaatgcatctaaaaagttaatttttgcttataaatatgaccggagggagtat 5368920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 31635765 - 31635871
Alignment:
Q  9 taaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagtttt 108  Q
    ||||||||||||||||  |||||||||||||| ||  | | | ||   || || |||||||||| || | ||||||||||||||| ||||||||| ||||    
T  31635765 taaaacttcactttttatatacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaaaaagtgaaatttt 31635864  T
Q  109 gtttata 115  Q
    | |||||    
T  31635865 gcttata 31635871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 31635864 - 31635766
Alignment:
Q  10 aaaacttcactttttggatacattgaataattaaactgtccagtctatactaaagactagatacatgaattattcaatgtatctgaaaagtgaagtttt 108  Q
    |||| |||||||||| |||||||||||||| |||  | || |||||||| |||  ||   ||||||  |||||||||||||| | ||||||||||||||    
T  31635864 aaaatttcactttttagatacattgaataactaatatatctagtctataataagcaccgaatacatttattattcaatgtatataaaaagtgaagtttt 31635766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 30800289 - 30800342
Alignment:
Q  69 gatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatga 122  Q
    ||||||| ||||||||||| ||||| ||||||  |||||||||||||| |||||    
T  30800289 gatacattaattattcaatatatctaaaaagtagagttttgtttataacaatga 30800342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 38834677 - 38834601
Alignment:
Q  63 agactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagtatatga 139  Q
    |||||| |||||| | ||||| |||| |||| |||| | || ||||| |||||||| |||||| |||||||||||||    
T  38834677 agactatatacatcatttatttaatgaatctaaaaaataaatttttgcttataatagtgaccggagggagtatatga 38834601  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 33971 - 34020
Alignment:
Q  85 aatgtatctgaaaagtgaagttttgtttataataatgaccgaagggagta 134  Q
    ||||||||| ||||||||||||||| || |||||||||| |||| |||||    
T  33971 aatgtatctaaaaagtgaagttttgcttgtaataatgacagaagcgagta 34020  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 77414 - 77378
Alignment:
Q  64 gactagatacatgaattattcaatgtatctgaaaagt 100  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  77414 gactacatacataaattattcaatgtatctgaaaagt 77378  T

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