View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_17 (Length: 348)
Name: NF19189_low_17
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 40380448 - 40380772
Alignment:
| Q |
11 |
cacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgtgctca |
110 |
Q |
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| T |
40380448 |
cacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgggctca |
40380547 |
T |
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| Q |
111 |
tagatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattgg |
210 |
Q |
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| T |
40380548 |
tagatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgctaataattgtgttgttacataatagtggattgg |
40380647 |
T |
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| Q |
211 |
ttggttga-cttaaagatgatagaacattattgatctaa------ccttagtttttatcctcatttgaatactgtcttcttttgttaagtcttctggtta |
303 |
Q |
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| T |
40380648 |
ttggttgatctcaagcatgatagaacattattgatctaagactgtccttagtttttatcctcatttggatgctgtcttcttttgttaagtcttctggttg |
40380747 |
T |
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| Q |
304 |
aacatttctaaagtgagaacttaca |
328 |
Q |
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| T |
40380748 |
aacatttttaaagtgagaacttaca |
40380772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 40391789 - 40392038
Alignment:
| Q |
11 |
cacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgtgctca |
110 |
Q |
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| T |
40391789 |
cacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgggctca |
40391888 |
T |
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| Q |
111 |
tagatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattgg |
210 |
Q |
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| T |
40391889 |
tagatttcgcgttctttggtttgatggcgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataataatgaattgg |
40391988 |
T |
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| Q |
211 |
ttggttgacttaaag-atgatagaacattattgatctaaccttagttttt |
259 |
Q |
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| T |
40391989 |
ttggttgacctaaagcatgatagaacattattgatctaaccttagttttt |
40392038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 41054542 - 41054416
Alignment:
| Q |
123 |
tctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattggttggttgactta |
222 |
Q |
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| T |
41054542 |
tctttggtttgatggcgatgacaatggatgcagcttttgctcaaaacaatgttgccaataattgtgttgttacataatagtggattggttggttgacctg |
41054443 |
T |
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| Q |
223 |
aag-atgatagaacattattgatctaa |
248 |
Q |
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| T |
41054442 |
aagcatgagagaacattattgatctaa |
41054416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 40392041 - 40392090
Alignment:
| Q |
279 |
cttcttttgttaagtcttctggttaaacatttctaaagtgagaacttacatag |
331 |
Q |
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| T |
40392041 |
cttcttttgttaagtct---ggttaaacatttctgaagtgagaacttacatag |
40392090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 41052261 - 41052219
Alignment:
| Q |
280 |
ttcttttgttaagtcttctggttaaacatttctaaagtgagaa |
322 |
Q |
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| T |
41052261 |
ttctttggttaagtcttctggttgaacttttctaaagtgagaa |
41052219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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