View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_low_18 (Length: 336)

Name: NF19189_low_18
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_low_18
NF19189_low_18
[»] chr2 (2 HSPs)
chr2 (8-318)||(42688079-42688389)
chr2 (21-77)||(42693652-42693708)
[»] chr3 (1 HSPs)
chr3 (18-77)||(36744657-36744716)
[»] chr8 (4 HSPs)
chr8 (19-78)||(6457567-6457626)
chr8 (15-78)||(6263796-6263859)
chr8 (19-78)||(6451378-6451437)
chr8 (20-77)||(6332484-6332541)
[»] chr7 (1 HSPs)
chr7 (7-92)||(46710869-46710954)
[»] chr1 (1 HSPs)
chr1 (16-68)||(47128441-47128493)
[»] chr5 (1 HSPs)
chr5 (22-89)||(9604084-9604151)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 42688079 - 42688389
Alignment:
Q  8 gagcagagagtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcgtggtcttaaagtaagttc 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42688079 gagcagtgagtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcgtggtcttaaagtaagttc 42688178  T
Q  108 gagtatttattgctaaacattttgaataatctaattattttgattgatatcagtgttaaatttgtttattgatgtatattcataataaaatgaatgtcta 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42688179 gagtatttattgctaaacattttgtataatctaattattttgattgatatcagtgttaaatttgtttattgatgtatattcataataaaatgaatgtcta 42688278  T
Q  208 tggtataatatagagtcatgtattatcatatttcttcatgatatttatttttaatgaatggtaggagtttcctccaaaaagcaatcttgatcccacagta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42688279 tggtataatatagagtcatgtattatcatatttcttcatgatatttatttttaatgaatggtaggagtttcctccaaaaagcaatcttgatcccacagta 42688378  T
Q  308 tatggtgatca 318  Q
    |||||||||||    
T  42688379 tatggtgatca 42688389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 42693708 - 42693652
Alignment:
Q  21 gtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcc 77  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||    
T  42693708 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcc 42693652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 36744657 - 36744716
Alignment:
Q  18 taagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcc 77  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  36744657 taagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 36744716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6457626 - 6457567
Alignment:
Q  19 aagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcct 78  Q
    |||||||||||||||||||||||||| |||| |||||| ||| |||||||||||||||||    
T  6457626 aagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcct 6457567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 6263859 - 6263796
Alignment:
Q  15 gagtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcct 78  Q
    ||||||||||||||||||||| ||||| || |||| |||||| || ||||||||||||||||||    
T  6263859 gagtaagtctgcatggatgactgatgatgaatttggaagagagattcttgctggtgtaaatcct 6263796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6451437 - 6451378
Alignment:
Q  19 aagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcct 78  Q
    |||||||||||||  || |||||||| |||| |||||| |||||||||||||||||||||    
T  6451437 aagtctgcatggaatactgatgaagaatttggaagagagatgcttgctggtgtaaatcct 6451378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 6332541 - 6332484
Alignment:
Q  20 agtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcc 77  Q
    |||||||||||||||| |||| ||| |||||||| || ||| |||||||||| |||||    
T  6332541 agtctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatcc 6332484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 46710954 - 46710869
Alignment:
Q  7 ggagcagagagtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcgtgg 92  Q
    |||||||||  ||| ||||||||||  || |||||||| ||||| ||||||||||| |||||||||||||||  ||| ||||||||    
T  46710954 ggagcagaggataaatctgcatggagaactgatgaagaatttgctagagaaatgctggctggtgtaaatcctgtcataattcgtgg 46710869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 47128493 - 47128441
Alignment:
Q  16 agtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctgg 68  Q
    |||||| ||||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  47128493 agtaagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg 47128441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 9604084 - 9604151
Alignment:
Q  22 tctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcg 89  Q
    |||||||||||||| |||||||| |||| |||||| ||| ||||||| ||||| |||||  |||||||    
T  9604084 tctgcatggatgactgatgaagaatttggaagagagatggttgctggagtaaacccttgtgtgattcg 9604151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University