View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_19 (Length: 336)
Name: NF19189_low_19
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 36440105 - 36439800
Alignment:
| Q |
23 |
atcatctgatcagatgttgaaca---accttatcaatcaaccgtgaaggcttacttggcaaggccgtggaggccattttcaagggcagtctacatcaaca |
119 |
Q |
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| T |
36440105 |
atcatctgatcagatgttgaactcataccttatcaatcaaccgtgaaggcttacttggcaaggccgtggaggccattttcaagggcagtctacatcaaca |
36440006 |
T |
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| Q |
120 |
attatatggatgattatattcatcaaaatgggtacattattcggaactcaatgaacccaaacaccaagaactcttacttcgcgaagtttggccacactag |
219 |
Q |
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| T |
36440005 |
attatatggatgattatattcatcaa--tgggtacattattcggaactcaatgaacccaaacaccaagaactcttacttcgcgaagtttggccacactag |
36439908 |
T |
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| Q |
220 |
acttagggccaatgctacatcaagagtgaaattagcaaaatgtcttatcaccaaagatgaggctactaattcactattcaattattgcttcagggtagca |
319 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| || ||||||||||| |
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| T |
36439907 |
acttagggccaatgctacatcaagagtgaaatgagcaaaatgtcttatcaccaaagatg--------aattcactattgaattatggcctcagggtagca |
36439816 |
T |
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| Q |
320 |
cttggttgccttctatt |
336 |
Q |
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||| ||||||||||||| |
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| T |
36439815 |
ctt-gttgccttctatt |
36439800 |
T |
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