View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_20 (Length: 327)
Name: NF19189_low_20
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 43394214 - 43394521
Alignment:
| Q |
1 |
aattggtataaaagttttaatttctggactgtatcacatgatgcggctgcaatattattgctgtagtagtgtctgcaacgacatcaacccgcaattgtgc |
100 |
Q |
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| T |
43394214 |
aattggtataaaagttttaatttctggactgtatcacatgatgcggctgcaatattattgctgtagtagtgtctgcaacgacatcaacccgcaattgtgc |
43394313 |
T |
|
| Q |
101 |
tatgattataaatcacaacaaaacacttatcgcaacaccacaacatagtggaaacaaacaacacctacattagaccgcaacagacaatatattacccaag |
200 |
Q |
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| T |
43394314 |
tatgattataaatcacaacaaaacacttatcgcaacaccacaacatagtggaaacaaacaacacctacattagaccgcaacagacaatatattacccaag |
43394413 |
T |
|
| Q |
201 |
tttttatagctggggcaataagagagaatcacaataatggtacttgtaacaaggtgtaacattatttcctttatagtgatgatagtacaaactataatgc |
300 |
Q |
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| T |
43394414 |
tttttatagctgggacaataagagagagtcacaatgatggtatttgtaacaaggtgtaacataatttcctttatagtgatgatagtacaaactataatgc |
43394513 |
T |
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| Q |
301 |
ttcatagc |
308 |
Q |
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|||||||| |
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| T |
43394514 |
ttcatagc |
43394521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 37160154 - 37160231
Alignment:
| Q |
45 |
ggctgcaatattattgctgtagtagtgtctgcaacgacatcaacccgcaattgtgctatgattataaatcacaacaaa |
122 |
Q |
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| T |
37160154 |
ggctgcaatattattgttgcggcagagtttgcaacagtatcagcccacaattgtgctatgattataaatcacaacaaa |
37160231 |
T |
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