View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_22 (Length: 320)
Name: NF19189_low_22
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 53614195 - 53614498
Alignment:
| Q |
1 |
aagtcctgaaacatggctatcagttgaaacgcgtcaatgaagctagaagacttggttatccttggctttgtagttttctcctatagcacatatagtcaga |
100 |
Q |
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| T |
53614195 |
aagtcctgaaacatggctatcagttgaaacgcgttaatgaagcttgaagacttggttatccttggctttgtagttttctcctatagcacatatagtcaga |
53614294 |
T |
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| Q |
101 |
caatttggttcataactccaattgagtgttttctatgactactatttggtaacaaattacctcaattgaattgaaagcacaactatcatcatccaagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53614295 |
caatttggttcataactccaattgagtgttttctatgactgctatttggtagcaaattacctcaattgaattgaaagcacaactatcatcatccaagtta |
53614394 |
T |
|
| Q |
201 |
atgatcggatcaaattcatatgcacaaataggcttataatctgtttgaaaccactcatcatcaataatacccgaaatagttatccgctgtgagagatttg |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53614395 |
atgatcggatcaaattcatacgcacaaataggcttataatctgtttgaaaccactcatcatcaataatacccgaaatagttatccgctgtgagagatttg |
53614494 |
T |
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| Q |
301 |
gaag |
304 |
Q |
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|||| |
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| T |
53614495 |
gaag |
53614498 |
T |
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