View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19189_low_24 (Length: 309)
Name: NF19189_low_24
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_24 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 7623691 - 7623849
Alignment:
| Q |
147 |
tttattctcttatataaaattcgaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
246 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623691 |
tttattctcttagataaaattcaaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
7623790 |
T |
|
| Q |
247 |
ttgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactt |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623791 |
ttgagaaaatgatattaat----taactaacctgacgcaagtgtttgaattcttccatgactt |
7623849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 7623391 - 7623530
Alignment:
| Q |
10 |
attatactcaagtcaatataaccaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623391 |
attatactcaagtcaatataagcaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
7623490 |
T |
|
| Q |
110 |
gaatactatatttttaatttaattttctgggaagattttt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7623491 |
gaatactatatttttaatttaattttctcggaagattttt |
7623530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 7659908 - 7659836
Alignment:
| Q |
237 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7659908 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactt |
7659836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University