View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_low_25 (Length: 304)

Name: NF19189_low_25
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_low_25
NF19189_low_25
[»] chr4 (3 HSPs)
chr4 (223-302)||(9944305-9944384)
chr4 (28-147)||(19695388-19695507)
chr4 (28-147)||(19705973-19706092)
[»] chr1 (1 HSPs)
chr1 (33-147)||(20590088-20590202)
[»] chr8 (2 HSPs)
chr8 (5-146)||(29921336-29921477)
chr8 (56-147)||(3343149-3343240)
[»] chr2 (2 HSPs)
chr2 (56-147)||(17099390-17099481)
chr2 (59-147)||(26071919-26072007)
[»] scaffold0250 (1 HSPs)
scaffold0250 (56-147)||(24940-25031)
[»] chr3 (1 HSPs)
chr3 (32-147)||(14767343-14767458)
[»] chr6 (1 HSPs)
chr6 (59-147)||(20894788-20894876)
[»] chr5 (1 HSPs)
chr5 (59-147)||(180792-180880)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 9944384 - 9944305
Alignment:
Q  223 aaattccctcttgcatgcattaaagcatacatatcctttcaaacactggccctgcatctccaactgcacatttaatccta 302  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9944384 aaatgccctcttgcatgcattaaagcatacatatcctttcaaacactggtcctgcatctccaactgcacatttaatccta 9944305  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 19695507 - 19695388
Alignment:
Q  28 aataccattcaagtcacccaaaagaaggtcaagaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttg 127  Q
    ||||||||||||||||||||| |  || ||  ||||||| ||||||| ||||||||||| |||||| |||| | |||||||||| || | ||| || |||    
T  19695507 aataccattcaagtcacccaataacagttccggaaaccagtcccatgcatcctttgtttcagcttccactactgcaaatgcaattggtaacatttgattg 19695408  T
Q  128 ttcccatctttcccaattgc 147  Q
    ||  ||||||||| ||||||    
T  19695407 ttgtcatctttcctaattgc 19695388  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 19706092 - 19705973
Alignment:
Q  28 aataccattcaagtcacccaaaagaaggtcaagaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttg 127  Q
    ||||||||||||||||||||| |  || ||  ||||||| ||||||| ||||||||||| |||||| |||| | |||||||||| || | ||| || |||    
T  19706092 aataccattcaagtcacccaataacagttccggaaaccagtcccatgcatcctttgtttcagcttccactactgcaaatgcaattggtaacatttgattg 19705993  T
Q  128 ttcccatctttcccaattgc 147  Q
    ||  ||||||||| ||||||    
T  19705992 ttgtcatctttcctaattgc 19705973  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 20590088 - 20590202
Alignment:
Q  33 cattcaagtcacccaaaagaaggtcaagaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttccc 132  Q
    |||||||||||||||| |  || || |||||||| ||||||| ||||||||||| |||||| |||| | |||||||||| || | ||| || ||||| ||    
T  20590088 cattcaagtcacccaataacagttccagaaaccagtcccatgcatcctttgtttaagcttccactactgcaaatgcaattggtaacatttgattgttacc 20590187  T
Q  133 atctttcccaattgc 147  Q
    |||||||||||||||    
T  20590188 atctttcccaattgc 20590202  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 29921336 - 29921477
Alignment:
Q  5 atgaaagaccgcttctttgcttgaataccattcaagtcacccaaaagaaggtcaagaaaccaatcccatgaatcctttgttttagcttctactattacaa 104  Q
    |||||||||| ||| ||||||||||| |||||||| | |  ||| ||||| ||||||||||| || ||||  |||||||||| | ||||||||| | |||    
T  29921336 atgaaagaccacttttttgcttgaatgccattcaaattagtcaatagaagatcaagaaaccagtctcatgcttcctttgtttcaacttctactactgcaa 29921435  T
Q  105 atgcaataggcagcatctggttgttcccatctttcccaattg 146  Q
    ||||| | |||||| | || || ||| |||||||||||||||    
T  29921436 atgcatttggcagcgtttgattattctcatctttcccaattg 29921477  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 3343149 - 3343240
Alignment:
Q  56 tcaagaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttcccatctttcccaattgc 147  Q
    ||||||||| | ||||||||||||||||| | |||||| |||| | |||||||||| || | ||| || ||||| |||||||||||||||||    
T  3343149 tcaagaaactagtcccatgaatcctttgtctcagcttccactactgcaaatgcaattggtaacatttgattgttgccatctttcccaattgc 3343240  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 17099481 - 17099390
Alignment:
Q  56 tcaagaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttcccatctttcccaattgc 147  Q
    ||||||||||| ||||||||||||||||| | |||||| |||| | |||||||||| || | ||| || ||||| |||||||||||||||||    
T  17099481 tcaagaaaccagtcccatgaatcctttgtctcagcttccactactgcaaatgcaattggtaacatttgattgttgccatctttcccaattgc 17099390  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 26071919 - 26072007
Alignment:
Q  59 agaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttcccatctttcccaattgc 147  Q
    |||||||||||||| || ||||| |||| ||| || || |   |||||||||| |||| |||||| || ||||||||||| ||||||||    
T  26071919 agaaaccaatcccaagattccttggtttcagcctccacaacagcaaatgcaatgggcatcatctgattattcccatctttaccaattgc 26072007  T

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Target: scaffold0250 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 24940 - 25031
Alignment:
Q  56 tcaagaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttcccatctttcccaattgc 147  Q
    ||||||||| | ||||||||||||||||| | |||||| |||| | |||||||||| || | ||| || ||||| |||||||||||||||||    
T  24940 tcaagaaacaagtcccatgaatcctttgtctcagcttccactactgcaaatgcaattggtaacatttgattgttgccatctttcccaattgc 25031  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 14767458 - 14767343
Alignment:
Q  32 ccattcaagtcacccaaaagaaggtcaagaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttcc 131  Q
    |||||||||||| |||| |  || ||||||||| | || ||||  |||||||||| ||||||||||| | |||||||||| || | ||| || ||||| |    
T  14767458 ccattcaagtcagccaataacagttcaagaaacgagtctcatgcttcctttgtttcagcttctactactgcaaatgcaattggtaacatttgattgtttc 14767359  T
Q  132 catctttcccaattgc 147  Q
    |||||||| |||||||    
T  14767358 catctttctcaattgc 14767343  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 20894788 - 20894876
Alignment:
Q  59 agaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttcccatctttcccaattgc 147  Q
    ||||| |||||||| || ||||| |||| ||| || || |  ||||||||||| |||| |||||| || ||||||||||| ||||||||    
T  20894788 agaaaacaatcccaagattccttggtttcagcctccacaacaacaaatgcaatgggcatcatctgattattcccatctttaccaattgc 20894876  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 180880 - 180792
Alignment:
Q  59 agaaaccaatcccatgaatcctttgttttagcttctactattacaaatgcaataggcagcatctggttgttcccatctttcccaattgc 147  Q
    |||||||||||||| || ||||| |||| ||| || || |   |||||||||| |||| |||||| || ||||||||||| ||||||||    
T  180880 agaaaccaatcccaagattccttggtttcagcctccacaacagcaaatgcaatgggcatcatctgattattcccatctttaccaattgc 180792  T

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