View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_26 (Length: 303)
Name: NF19189_low_26
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 31409888 - 31409605
Alignment:
| Q |
14 |
catcactctgtacatcttatttgagttaataatattcttttttgtttcaaaagtcatggttgcaagaaaaataatatcatagaattgagcatgaacaacc |
113 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31409888 |
catctctctgtacatcatatttgagttaataatattcttttttgtttcaaaagccatggttgcaagaaaaataatatcatggaattgagcatgaacaacc |
31409789 |
T |
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| Q |
114 |
atgaaattttgaggaaatttaagannnnnnnatgtttagaatggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaagggg |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31409788 |
atgaaattttgaggaaatttaagattttt--atgtttagaatggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaagggg |
31409691 |
T |
|
| Q |
214 |
ttaatcaattttgaattttgattttgaatatgatcatttctgggtagagatgttggtgagcatgagttcatgaatattcttggaga |
299 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||| | ||||||| |
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| T |
31409690 |
ttaatcaattttgaattttgattttgaatatcatcatttctgggtagaggtgttgttgagcatgagtttatgaatagtgttggaga |
31409605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 52190054 - 52190142
Alignment:
| Q |
154 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaaggggttaatcaattttgaattttgattttgaat |
242 |
Q |
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| T |
52190054 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaaggggaaaatcaattttgaattttgattttgaat |
52190142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 30830241 - 30830171
Alignment:
| Q |
216 |
aatcaattttgaattttgattttgaatatgatcatttctgggtagagatgttggtgagcatgagttcatga |
286 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||| |
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| T |
30830241 |
aatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttggtgagcatgagttcatga |
30830171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 68 - 280
Target Start/End: Complemental strand, 19802238 - 19802026
Alignment:
| Q |
68 |
catggttgcaag-aaaaataatatcatagaattgagcatgaacaaccatgaaattttgaggaaatttaagannnnnnnatgtttagaatggttttgggtt |
166 |
Q |
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|||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |
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| T |
19802238 |
catggttgcaaggaaaaaaaaaatcatagatttgagcatgaacaaccatgaaattttgaggaaatttaggatttttt-atgtttattatggttttgggtt |
19802140 |
T |
|
| Q |
167 |
gttggattatggattttgaattgatgatgaagaagaagataaaggggttaatcaattttgaattttgattttgaatatgatcatttctgggtagagatgt |
266 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||| || | || ||| |
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| T |
19802139 |
gttggattatagattttgaattgatgatgaagaagaagataaaggggtaaatcaatttcgaatttagattttgaatatgataatttctaggcataggtgt |
19802040 |
T |
|
| Q |
267 |
tggtgagcatgagt |
280 |
Q |
| |
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|||||||||||||| |
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| T |
19802039 |
tggtgagcatgagt |
19802026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 17864400 - 17864488
Alignment:
| Q |
154 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaaggggttaatcaattttgaattttgattttgaat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17864400 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaaggggtaaatcaattttgaattttgattttgaat |
17864488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 45291588 - 45291680
Alignment:
| Q |
154 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaag-gggttaatcaattttgaattttgattttgaatatga |
246 |
Q |
| |
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||||||||| ||||| |||||||| ||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
45291588 |
atggttttgagttgt-ggattatgaattttgaattgatgatgaaaataaagataaagagggtaaatcaattttgaattttgattttgaatatga |
45291680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 41739937 - 41739854
Alignment:
| Q |
216 |
aatcaattttgaattttgattttgaatatgatcatttctgggtagagatgttggtgagcatgagttcatgaatattcttggaga |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| | || || |||||||||||||||||||| || | ||||||| |
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| T |
41739937 |
aatcaattttgaattttgattttgaatatgatcacttctgggcataggtgctggtgagcatgagttcatgagtagtgttggaga |
41739854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 38517016 - 38516924
Alignment:
| Q |
154 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaag-gggttaatcaattttgaattttgattttgaatatga |
246 |
Q |
| |
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||||||||| ||||| | |||||| ||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
38517016 |
atggttttgagttgt-gaattatgaattttgaattgatgatgaagataaatataaagagggtaaatcaattttgaattttgattttgaatatga |
38516924 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 9448401 - 9448493
Alignment:
| Q |
154 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataaag-gggttaatcaattttgaattttgattttgaatatga |
246 |
Q |
| |
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||||||||| ||||| |||||||| ||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
9448401 |
atggttttgagttgt-ggattatgaattttgaattgatgatgaaaataaagataaagagggtaaatcaattttgaattttgattttgaatatga |
9448493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 38921770 - 38921687
Alignment:
| Q |
216 |
aatcaattttgaattttgattttgaatatgatcatttctgggtagagatgttggtgagcatgagttcatgaatattcttggaga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| | || ||||||||| ||||||||||||| || | ||||||| |
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|
| T |
38921770 |
aatcaattttgaattttgattttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggaga |
38921687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 35063376 - 35063440
Alignment:
| Q |
216 |
aatcaattttgaattttgattttgaatatgatcatttctgggtagagatgttggtgagcatgagt |
280 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||||| |
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|
| T |
35063376 |
aatcaattttgaattttgattttgaatatgatcatttatgggcataggtgttggtgagcatgagt |
35063440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 31437832 - 31437877
Alignment:
| Q |
154 |
atggttttgggttgttggattatggattttgaattgatgatgaaga |
199 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||| |||||||| |
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|
| T |
31437832 |
atggttttgggttgttggattatgaattttgagttgaagatgaaga |
31437877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 17330850 - 17330904
Alignment:
| Q |
154 |
atggttttgggttgttggattatggattttgaattgatgatgaagaagaagataa |
208 |
Q |
| |
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|||||||| | |||||| |||||||||||||| || |||||||||| |||||||| |
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| T |
17330850 |
atggttttcgattgttgcattatggattttgactttatgatgaagatgaagataa |
17330904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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