View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19189_low_27 (Length: 301)
Name: NF19189_low_27
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 4784582 - 4784849
Alignment:
| Q |
18 |
tgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4784582 |
tgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgactt |
4784681 |
T |
|
| Q |
118 |
catgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcggggg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4784682 |
catgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacctggaagcagaggcttgagattctattaggtgccgcgcggggg |
4784781 |
T |
|
| Q |
218 |
ttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4784782 |
ttgcattatctgcatgcaggtgcgaagcacaatatcatacaccgtgacgtgaagagtacaaacatatt |
4784849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 4817011 - 4817278
Alignment:
| Q |
18 |
tgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4817011 |
tgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgactt |
4817110 |
T |
|
| Q |
118 |
catgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcggggg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4817111 |
catgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacctggaagcagaggcttgagattctattaggtgccgcgcggggg |
4817210 |
T |
|
| Q |
218 |
ttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
4817211 |
ttgcattatttgcatgcaggtgcgaagcacaatatcatacaccgtgatgtgaagagtacaaacatatt |
4817278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 4863261 - 4862991
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4863261 |
tcatgaatgagatcgaattactctctcagcttcgtcatattcacttggtttctctcattggatattgcaacgaaggtgaggagatgattctcgtttatga |
4863162 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgg |
214 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||| || || | || || |
|
|
| T |
4863161 |
cttcatgcaacgtggcactctccgtgaatatctttatggttcggataatgaacctcttacttggaagaagagacttgagattctgttgggggcagcaagg |
4863062 |
T |
|
| Q |
215 |
gggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
||||| |||||||| ||||| |||| ||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
4863061 |
gggttacattatcttcatgctggtgtaaagcacaatatcatacaccgtgacgtgaagagtaccaacatatt |
4862991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 4697934 - 4698204
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||| || |
|
|
| T |
4697934 |
tcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacga |
4698033 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgg |
214 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||| ||||| || |||||| ||||||||||||||||| |||| || ||||||||||| || | || | |
|
|
| T |
4698034 |
cttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaacctcttacttggaagaagagactcgagattctattgggggcagcaaga |
4698133 |
T |
|
| Q |
215 |
gggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
|| | |||||||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
4698134 |
ggcctacattatcttcatgcaggtgcgaagcacaatatcatacaccgtgatgtgaagagtaccaacatatt |
4698204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 4846765 - 4847035
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||| || |||||||||||| |||||||| |
|
|
| T |
4846765 |
tcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatga |
4846864 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgg |
214 |
Q |
| |
|
||||||||||||||| | ||| ||||| |||| ||||| || ||||| ||||||||| ||||| || || || |||||||||||||| | || || |
|
|
| T |
4846865 |
cttcatgcaacgtggtactctcagtgaacatctctatggttcggataatgaacctcttaggtggaatcaaagactcgagattctattaggtgcagcaagg |
4846964 |
T |
|
| Q |
215 |
gggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4846965 |
gggttgaattatcttcatgaaggtgcgaagcacaatatcatacatcgtgacgttaagagtacaaacatatt |
4847035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 4712810 - 4713080
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
4712810 |
tcatgaatgaaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatga |
4712909 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgg |
214 |
Q |
| |
|
||| ||| ||| ||||| ||| ||||| |||| ||||| || |||||| ||||||||| ||||| || || ||| | ||||||||| | | || || |
|
|
| T |
4712910 |
ctttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaagg |
4713009 |
T |
|
| Q |
215 |
gggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
|| ||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
4713010 |
ggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatatt |
4713080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 4652892 - 4652622
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||| || ||||||||||| || || | |||||||||||||| | ||| |||||| | |||||||| |
|
|
| T |
4652892 |
tcatgaatgagatcgagttactctcccagcttcgccacattcacttggtatccctcgtgggatattgcaatgatgacacagaaatgattttggtttatga |
4652793 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctctta-cttggaagcagaggcttgagattctattaggctccgcgcg |
213 |
Q |
| |
|
|||||||||| || | ||| ||||| ||||||||||| || ||||| | || |||| | |||||| ||||||||||||||||||| || |||||| | |
|
|
| T |
4652792 |
gttcatgcaacacggtactctgtgtgagtatctttatggttctaataaccagcc-cttaccgtggaagaagaggcttgagattctattgggttccgcgag |
4652694 |
T |
|
| Q |
214 |
ggggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
||| || ||||||| ||||||| | ||| || || || |||||||||||||| ||||| || |||||||| |
|
|
| T |
4652693 |
agggctgaattatcttcatgcagaggtgaaacacaagataatacaccgtgacgtgaagagcaccaacatatt |
4652622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 4643076 - 4642806
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| || ||||||||||| || || | ||||||||||| || | |||||||||| | |||||||| |
|
|
| T |
4643076 |
tcatgaatgaaatcgagttgctctcccagcttcgccacattcacttggtgtccctcgtgggatattgcaacgatgacacagagatgattttggtttatga |
4642977 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgg |
214 |
Q |
| |
|
|||||||| | || | ||| ||||| ||||||||||| || ||||| | || || |||||| |||||||||||| ||||||||||| |||| | |
|
|
| T |
4642976 |
gttcatgcagcacggtactctttgtgagtatctttatggttctaataacgagccactaccttggaggcagaggcttgaaattctattaggtgccgcaaga |
4642877 |
T |
|
| Q |
215 |
gggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
||| || ||||||| ||||| | | |||||| || || ||||| |||||||| ||||| || |||||||| |
|
|
| T |
4642876 |
gggctgaattatcttcatgctgaggtgaagcacaaaataatacatcgtgacgtgaagagcaccaacatatt |
4642806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 4666307 - 4666037
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
||||||| || || || ||||||||||||||||| || ||||||||||| || ||| | |||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
4666307 |
tcatgaacgaaatcgaattgctctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgacacagagatgattctggtttatga |
4666208 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgg |
214 |
Q |
| |
|
|||||||| | || | ||| || || ||||||||||| || ||||| | || || | ||||||||||||||||||||||| || || | ||| | |
|
|
| T |
4666207 |
gttcatgcagcacggtactctttgcgagtatctttatggttctaataaccagcccctatcatggaagcagaggcttgagattcttttgggtgcagcgaga |
4666108 |
T |
|
| Q |
215 |
gggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
||| || ||||||| ||| | | | ||| ||||| || |||||||||||||| ||||| || |||||||| |
|
|
| T |
4666107 |
gggctgaattatcttcatactgaggtgaaacagaagataatacaccgtgacgtgaagagcaccaacatatt |
4666037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 4636229 - 4636046
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||| || ||||||||||| || ||| | ||||||||||| || |||||||||||| || ||||| |
|
|
| T |
4636229 |
tcatgaacgagatcgagttgctctcccagcttcgccacattcacttggtatcccttgtgggatattgcaacgacaagacagagatgattctggtctatga |
4636130 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattct |
198 |
Q |
| |
|
|||||||| | || | ||| || || ||||||||||| || ||||| |||| || | ||||||||||||||||| ||||| |
|
|
| T |
4636129 |
gttcatgcagcacggtactctctgcgagtatctttatggttctaataaccaacccctaccatggaagcagaggcttgaaattct |
4636046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 4661176 - 4660906
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| || ||||| ||||| || || || |||||||| ||||| | |||||||||| |||||||| |
|
|
| T |
4661176 |
tcatgaacgaaatcgagttgctctcccagcttcgccacattcatttggtgtccctcatgggatattgtaatgacaacacatagatgattctggtttatga |
4661077 |
T |
|
| Q |
115 |
cttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgg |
214 |
Q |
| |
|
|||||||| || || | ||| || || |||||||||| || ||||| | || || |||||| ||| ||||||||||| ||||| || || || | |
|
|
| T |
4661076 |
attcatgcagcgcggtactctctgcgagcatctttatggttctaataaccagcccctaccttggaggcaaaggcttgagatcctattgggttcagcaaga |
4660977 |
T |
|
| Q |
215 |
gggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
285 |
Q |
| |
|
|||||||||||||| ||||| | | ||| || || || |||||||| ||||||||||| || |||||||| |
|
|
| T |
4660976 |
gggttgcattatcttcatgctgaggtgaaacacaaaataatacaccgcgacgtaaagagcaccaacatatt |
4660906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 4630281 - 4630173
Alignment:
| Q |
15 |
tcatgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatga |
114 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| || ||||||||||| || ||| | |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
4630281 |
tcatgaacgaaatcgagttgctctcccagcttcgccacattcacttggtgtcccttgtaggatattgcaatgacaacacagagatgattctggtttatga |
4630182 |
T |
|
| Q |
115 |
cttcatgca |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
4630181 |
gttcatgca |
4630173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 18926562 - 18926669
Alignment:
| Q |
94 |
agagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgag |
193 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| | ||| ||||| ||||| ||||| || ||||| |||| || ||||||||| ||||||||| |
|
|
| T |
18926562 |
agagatgattctgatttatgagttcatgcaacgtggtactctttgtgagtatctatatggttccaataaccaacccctactttggaagcaaaggcttgag |
18926661 |
T |
|
| Q |
194 |
attctatt |
201 |
Q |
| |
|
||| |||| |
|
|
| T |
18926662 |
attgtatt |
18926669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University