View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_29 (Length: 294)
Name: NF19189_low_29
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 41685835 - 41685556
Alignment:
| Q |
1 |
tgctcaggtaaacgaagctgatcctttcacacacacgaaaacaggaaggnnnnnnnnnnnnncaccagttaattgaatttccaataactaagcaaactta |
100 |
Q |
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| T |
41685835 |
tgctcaggtaaacgaagctgatcctttcacacacacgaaaacaggaaggaaaaaaaaaa---caccagttaattgaatttccaataactaagcaaactta |
41685739 |
T |
|
| Q |
101 |
tgaaatctacaagcattgacttgcaggtagcaatagaatgtatatacgttgcaatccaaacactagcgtatacccttatcctttactcaatgatggggtt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41685738 |
cgaaatctacaaggattgacttgcaggtagcaatagaatgtatatacgttgcaatccaaacactagcgtatacccttatcctttactcaatgatggggtt |
41685639 |
T |
|
| Q |
201 |
cccttggcaagctgacaagttcatctggttctactactttatattcatgtcctttg-ctactccacactttatggaatgatga |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
41685638 |
cccttggcaagctgacaagttcatctggttctactactttatattcatgtcctttgtctacttcacactttatggaatgatga |
41685556 |
T |
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