View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_3 (Length: 576)
Name: NF19189_low_3
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 36686237 - 36686786
Alignment:
| Q |
11 |
cacagaccgttcagcgagtgcttacctttggtcttgcttcttgtagaggtaattttagagatattttagttcattttgttggttgctttgttgttcttct |
110 |
Q |
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| T |
36686237 |
cacagacggttcagcgagtgcttacctttggtcttgcttcttgtagaggtaattttagagatattttagttcattttgttggttgctttgttgttcttct |
36686336 |
T |
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| Q |
111 |
tgaccgtgttttcaaactctattgttgacccgtaatctcgtctaaatttacgtttttaggtttgtgtttggtgttgatttcatgataaacttgttttata |
210 |
Q |
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| T |
36686337 |
tgaccgtgttttcaaactctattgttgacccgtaatctcgtctaaatttacgtttttaggtttgtgtttagtgttgatttgatgataaacttgttttata |
36686436 |
T |
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| Q |
211 |
gtgaaatcgaagctggcaccgaatttgaccgattcaactagcgacaaaattgaagaaatcggataaactcgtctgattttaagcgaatttgcgattttcc |
310 |
Q |
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| T |
36686437 |
gtgaaatcgaagctggcaccgaatttgaccgattcaactagcgacaaaattgaggaaatcggattaactcgtctgattttaagcgaatttgcgattttcc |
36686536 |
T |
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| Q |
311 |
attnnnnnnnnnnntcgggccaaatttgatttcttgccctataagtcatttaacatgtttgaatcttatcattgattttcttaccatagtgatgattcaa |
410 |
Q |
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| T |
36686537 |
att-aaaaaaaaaatctggccaaatttgatttcttgccctataagtcatttaacatgtttgaatcttatcaataactttcttaccattgtgatgattcaa |
36686635 |
T |
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| Q |
411 |
ttttacttaataatctttgtgattgtgaccatttccttcttcatcttcttaacctggttcatatttgtttctttccttttcacttttacttgttacnnnn |
510 |
Q |
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| T |
36686636 |
ttttacttaataatctttgtgattgtgaccatttccttcttcatcttcttaaccttgttcatatttgtttctttcgttttcacttttacttgttactttt |
36686735 |
T |
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| Q |
511 |
nnngaaaaatcacttggttagatcctttgtttctattgtaatcaacttcat |
561 |
Q |
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| T |
36686736 |
tttgaaaaatcacttggttagatcctttgtttctattgtaatcaacttcat |
36686786 |
T |
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