View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_low_35 (Length: 283)

Name: NF19189_low_35
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_low_35
NF19189_low_35
[»] chr1 (2 HSPs)
chr1 (31-185)||(16045864-16046020)
chr1 (214-270)||(16046049-16046105)
[»] scaffold0356 (2 HSPs)
scaffold0356 (22-185)||(4934-5095)
scaffold0356 (214-270)||(4849-4905)
[»] chr8 (4 HSPs)
chr8 (22-185)||(14107512-14107673)
chr8 (22-161)||(33857267-33857408)
chr8 (214-270)||(14107427-14107483)
chr8 (214-270)||(33857175-33857231)
[»] chr4 (2 HSPs)
chr4 (22-161)||(31925661-31925802)
chr4 (214-270)||(31925838-31925894)
[»] chr3 (4 HSPs)
chr3 (22-161)||(41759249-41759390)
chr3 (214-270)||(41759157-41759213)
chr3 (125-161)||(11817570-11817606)
chr3 (228-272)||(11817736-11817780)
[»] scaffold0316 (1 HSPs)
scaffold0316 (117-169)||(5756-5808)
[»] scaffold0003 (2 HSPs)
scaffold0003 (125-161)||(190596-190632)
scaffold0003 (228-272)||(190763-190807)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 16045864 - 16046020
Alignment:
Q  31 tttattttaatgctagtattttattcctatcaataaagattattacaaaagaatcggacaaaatgatatgaagaa--gnnnnnnnnctaatcttggtaat 128  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||            |||||||||||||    
T  16045864 tttattttaatgctagtattttactcctatcaataaagattattccaaatgaatcggacaaaatgatatgaagaaagaaaaaaaaattaatcttggtaat 16045963  T
Q  129 tttgattatagatagaacaattttcaattttaatgtcaaatcacctataatgttact 185  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  16045964 tttgattatagatggaacaatttttaattttaatgtcaaatcacctataatgttact 16046020  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 16046049 - 16046105
Alignment:
Q  214 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16046049 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 16046105  T

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Target: scaffold0356 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 5095 - 4934
Alignment:
Q  22 ttagattgttttattttaatgctagtattttattcctatcaataaagattattacaaaagaatcggacaaaatgatatgaagaagnnnnnnnnctaatct 121  Q
    |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| | |||||||||| ||||||||||||         |||||||    
T  5095 ttagattgttttattttaatgctagtattttactcctatcaatgaatattattacaaatggatcggacaaagtgatatgaagaa--aaaaaaactaatct 4998  T
Q  122 tggtaattttgattatagatagaacaattttcaattttaatgtcaaatcacctataatgttact 185  Q
    || ||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||    
T  4997 tgataattttgattatagatggaacaattttcaattttaatgtcacatcaccaataacgttact 4934  T

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Target: scaffold0356; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 4905 - 4849
Alignment:
Q  214 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4905 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 4849  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 14107673 - 14107512
Alignment:
Q  22 ttagattgttttattttaatgctagtattttattcctatcaataaagattattacaaaagaatcggacaaaatgatatgaagaagnnnnnnnnctaatct 121  Q
    |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| | |||||||||| ||||||||||||         |||||||    
T  14107673 ttagattgttttattttaatgctagtattttactcctatcaatgaatattattacaaatggatcggacaaagtgatatgaagaa--aaaaaaactaatct 14107576  T
Q  122 tggtaattttgattatagatagaacaattttcaattttaatgtcaaatcacctataatgttact 185  Q
    || ||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||    
T  14107575 tgataattttgattatagatggaacaattttcaattttaatgtcacatcaccaataacgttact 14107512  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 33857408 - 33857267
Alignment:
Q  22 ttagattgttttattttaatgctagtattttattcctatcaataaagattattacaaaagaatcggacaaaatgatatgaa--gaagnnnnnnnnctaat 119  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||| | |||||||||| |||||||||   ||         |||||    
T  33857408 ttagattgttttattttaatgcttgtattttactcctatcaatgaagatcattacaaatggatcggacaaagtgatatgaattcaaaaaaaaaaactaat 33857309  T
Q  120 cttggtaattttgattatagatagaacaattttcaattttaa 161  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  33857308 cttggtaattttgattatagatggaacaattttcaattttaa 33857267  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 14107483 - 14107427
Alignment:
Q  214 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14107483 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 14107427  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 33857231 - 33857175
Alignment:
Q  214 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857231 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 33857175  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 31925661 - 31925802
Alignment:
Q  22 ttagattgttttattttaatgctagtattttattcctatcaataaagattattacaaaagaatcggacaaaatgatatgaa--gaagnnnnnnnnctaat 119  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||| | |||||||||| |||||||||   ||         |||||    
T  31925661 ttagattgttttattttaatgcttgtattttactcctatcaatgaagatcattacaaatggatcggacaaagtgatatgaattcaaaaaaaaaaactaat 31925760  T
Q  120 cttggtaattttgattatagatagaacaattttcaattttaa 161  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  31925761 cttggtaattttgattatagatggaacaattttcaattttaa 31925802  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 31925838 - 31925894
Alignment:
Q  214 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31925838 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 31925894  T

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Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 41759390 - 41759249
Alignment:
Q  22 ttagattgttttattttaatgctagtattttattcctatcaataaagattattacaaaagaatcggacaaaatgatatgaa--gaagnnnnnnnnctaat 119  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||| | |||||||||| |||||||||   ||         |||||    
T  41759390 ttagattgttttattttaatgcttgtattttactcctatcaatgaagatcattacaaatggatcggacaaagtgatatgaattcaaaaaaaaaaactaat 41759291  T
Q  120 cttggtaattttgattatagatagaacaattttcaattttaa 161  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  41759290 cttggtaattttgattatagatggaacaattttcaattttaa 41759249  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 41759213 - 41759157
Alignment:
Q  214 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41759213 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtct 41759157  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 11817570 - 11817606
Alignment:
Q  125 taattttgattatagatagaacaattttcaattttaa 161  Q
    ||||||||||||||||| |||||||||||||||||||    
T  11817570 taattttgattatagatggaacaattttcaattttaa 11817606  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 11817736 - 11817780
Alignment:
Q  228 ttgattcattaaaaccatttctaaagattaagaaaattggtctct 272  Q
    |||||||||||||||||| |||||||||| ||||| || ||||||    
T  11817736 ttgattcattaaaaccatctctaaagatttagaaagtttgtctct 11817780  T

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Target: scaffold0316 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 5756 - 5808
Alignment:
Q  117 aatcttggtaattttgattatagatagaacaattttcaattttaatgtcaaat 169  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||    
T  5756 aatcttgataattttgattatagatggaacagttttcaattttaacgtcaaat 5808  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 190596 - 190632
Alignment:
Q  125 taattttgattatagatagaacaattttcaattttaa 161  Q
    ||||||||||||||||| |||||||||||||||||||    
T  190596 taattttgattatagatggaacaattttcaattttaa 190632  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 190763 - 190807
Alignment:
Q  228 ttgattcattaaaaccatttctaaagattaagaaaattggtctct 272  Q
    |||||||||||||||||| |||||||||| ||||| || ||||||    
T  190763 ttgattcattaaaaccatctctaaagatttagaaagtttgtctct 190807  T

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