View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_36 (Length: 279)
Name: NF19189_low_36
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 9944234 - 9943991
Alignment:
| Q |
14 |
ttccaccatgaatcagttccaaagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttacaagttgattgcaattc |
113 |
Q |
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| T |
9944234 |
ttccaccatgaatcagttccgaagccttattcttagccctacaaagcttaaagtgactcaacataactccccacttatttttacaagttgattgcaattc |
9944135 |
T |
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| Q |
114 |
cttaagtttcataccagatgagagtttcagaattggtatcagtttctcagccaacaaagcagtcttaatcaaccaaattttttcagtgttataacattta |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
9944134 |
cttaagtttcataccagatgagtgtttcagaattggtaccagtttcttagccaacaaagcagtcttaatcaacctaatttttccagtgttataacattta |
9944035 |
T |
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| Q |
214 |
tggtcagggttattcctagcaagaacaaagtaagtttttggttc |
257 |
Q |
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| T |
9944034 |
tggtcagggttattcctaacaagaacaaagtatgtttttggttc |
9943991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 29921695 - 29921804
Alignment:
| Q |
17 |
caccatgaatcagttccaaagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttacaagttgattgcaattcctt |
116 |
Q |
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||||||| || |||| |||||||| |||||||||||||| |||| | | |||||||| ||||||||||||| |||||||| || ||||||| |||| |
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| T |
29921695 |
caccatggataagttttaaagccttcttcttagccctatatatctgatagcttctcaacatcactccccacttatctttacaagatgcttgcaatccctt |
29921794 |
T |
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| Q |
117 |
aagtttcata |
126 |
Q |
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| T |
29921795 |
aagtttcata |
29921804 |
T |
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