View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19189_low_4 (Length: 473)

Name: NF19189_low_4
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19189_low_4
NF19189_low_4
[»] chr2 (1 HSPs)
chr2 (19-462)||(26706856-26707297)
[»] scaffold0531 (4 HSPs)
scaffold0531 (262-420)||(8928-9085)
scaffold0531 (322-465)||(8931-9073)
scaffold0531 (256-363)||(8979-9085)
scaffold0531 (150-187)||(8846-8883)
[»] chr8 (3 HSPs)
chr8 (42-327)||(19789731-19790007)
chr8 (321-383)||(19789888-19789948)
chr8 (394-430)||(19789902-19789938)
[»] chr4 (1 HSPs)
chr4 (73-186)||(40274627-40274740)
[»] chr6 (1 HSPs)
chr6 (111-192)||(34487909-34487990)
[»] chr7 (2 HSPs)
chr7 (144-192)||(12926228-12926276)
chr7 (321-374)||(12926166-12926218)
[»] scaffold0009 (2 HSPs)
scaffold0009 (116-192)||(161579-161654)
scaffold0009 (321-374)||(161651-161703)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 26706856 - 26707297
Alignment:
Q  19 ggaagccctgaatgaatcattatgaattacaatattcttgtttatttcacaatacattacactcatgagtcaaatgctcgcttaccccttacatctgatc 118  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||    
T  26706856 ggaagccctgaatgaatcattctgaattacaatattctcgttcatttcacaatacattacaatcatgagtcaaatggtcgcttaccccttacatctaatc 26706955  T
Q  119 tctcccttcgttggcctacgacaccccttaagagcaaacacaaatcaaaatcatcactaactcatggtttaaggctagggtaatagataagaatagttaa 218  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  26706956 tctcccttcgttggcctacgacaccccttaagagcaaacataaatcaaaatcatcactaactcatggtttaaggctacggtaatagataagagtagttaa 26707055  T
Q  219 aaatattcattcatatcaagtctattgcatcaatccaaatcggattagggtaatcaagaaaattccttcatctcaaaataatcacaacaatccgaatccg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  26707056 aaatattcattcatatcaagtctattgcatcaatccaaatcggattagggtaatcaagaaaattccttcatctcaaaatattcacaacaatctgaatccg 26707155  T
Q  319 acaagggtaatcaaagagtattcattcatctcaaattaatcacatcaatttgaatcttataagggtaagcaagggtattcattcatctcaatttaatcac 418  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||    
T  26707156 acaagggtaatc-aagagtattcattcatctcaaattaatcacatcaatttgaatcttataagggtaagcaagggt-ttcgttcatatcaaattaatcac 26707253  T
Q  419 atcaatccgaattcaatacggataatcaaggatattcattcatc 462  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  26707254 atcaatccaaattcaatacggataatcaaggatattcattcatc 26707297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 262 - 420
Target Start/End: Original strand, 8928 - 9085
Alignment:
Q  262 attagggtaatcaagaaaattccttcatctcaaaataatcacaacaatccgaatccgacaagggtaatcaaagagtattcattcatctcaaattaatcac 361  Q
    ||||||||||||||||| || | ||||||||||| |||||||  ||||| ||||||||  ||| ||||||| || |||||||||||||||||||||||||    
T  8928 attagggtaatcaagaatatccattcatctcaaattaatcacgtcaatctgaatccgattaggataatcaa-gaatattcattcatctcaaattaatcac 9026  T
Q  362 atcaatttgaatcttataagggtaagcaagggtattcattcatctcaatttaatcacat 420  Q
    |||||||||||||  |||| ||||| || |  ||||||| |||||||| ||||||||||    
T  9027 atcaatttgaatcccataaaggtaatcatgaatattcatgcatctcaaattaatcacat 9085  T

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Target: scaffold0531; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 465
Target Start/End: Original strand, 8931 - 9073
Alignment:
Q  322 agggtaatcaaagagtattcattcatctcaaattaatcacatcaatttgaatcttataagggtaagcaagggtattcattcatctcaatttaatcacatc 421  Q
    ||||||||||| || ||| ||||||||||||||||||||| ||||| ||||||  || ||| ||| ||||  |||||||||||||||| |||||||||||    
T  8931 agggtaatcaa-gaatatccattcatctcaaattaatcacgtcaatctgaatccgattaggataatcaagaatattcattcatctcaaattaatcacatc 9029  T
Q  422 aatccgaattcaatacggataatcaaggatattcattcatctca 465  Q
    |||  |||| | |||  | |||||| | |||||||| |||||||    
T  9030 aatttgaatcccataaaggtaatcatgaatattcatgcatctca 9073  T

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Target: scaffold0531; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 8979 - 9085
Alignment:
Q  256 aatcggattagggtaatcaagaaaattccttcatctcaaaataatcacaacaatccgaatccgacaagggtaatcaaagagtattcattcatctcaaatt 355  Q
    |||| ||||||| |||||||||| |||| ||||||||||| |||||||| ||||  |||||| | || ||||||| | || ||||||| |||||||||||    
T  8979 aatccgattaggataatcaagaatattcattcatctcaaattaatcacatcaatttgaatcccataaaggtaatc-atgaatattcatgcatctcaaatt 9077  T
Q  356 aatcacat 363  Q
    ||||||||    
T  9078 aatcacat 9085  T

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Target: scaffold0531; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 8846 - 8883
Alignment:
Q  150 gagcaaacacaaatcaaaatcatcactaactcatggtt 187  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  8846 gagcaaacacaagtcaaaatcatcaccaactcatggtt 8883  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 327
Target Start/End: Original strand, 19789731 - 19790007
Alignment:
Q  42 gaattacaatattcttgtttatttcacaatacattacactcatgagtcaaatgctcgcttaccccttacatctgatctctcccttcgttggcctacgaca 141  Q
    ||||||||||||| |  || ||||||||||| ||||||||||||||| |||  |||||||||||||||||| | |  |||||| ||||||||||| || |    
T  19789731 gaattacaatattatcattcatttcacaatatattacactcatgagtgaaacactcgcttaccccttacatataa--tctcccctcgttggcctatgata 19789828  T
Q  142 ccccttaagagcaaacacaaatcaaaatcatcactaactcatggtttaaggctagggtaatagataagaatagttaaaaatattcattcatatcaagtct 241  Q
     | | |||||||||||||||  ||||||||  ||||| ||||||||||     |||||||| ||||||  ||  | ||||||||||||||| ||||||      
T  19789829 -cacataagagcaaacacaacacaaaatcaatactaattcatggttta-----agggtaatcgataagggta-atcaaaatattcattcatctcaagtta 19789921  T
Q  242 attgcatcaatccaaatcggattagggtaatcaagaaaattccttcatctcaaaataatcacaacaatccgaatccgacaagggta 327  Q
    ||  ||||||||  |||| ||| |||| ||||||||| ||||  | | |||||| ||  |||||||||||||||| ||||||||||    
T  19789922 atcacatcaatctgaatctgataagggaaatcaagaacattctataagctcaaattatccacaacaatccgaatctgacaagggta 19790007  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 19789888 - 19789948
Alignment:
Q  321 aagggtaatcaaagagtattcattcatctcaaattaatcacatcaatttgaatcttataaggg 383  Q
    |||||||||||||   |||||||||||||||| |||||||||||||| ||||||| |||||||    
T  19789888 aagggtaatcaaaa--tattcattcatctcaagttaatcacatcaatctgaatctgataaggg 19789948  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 19789902 - 19789938
Alignment:
Q  394 tattcattcatctcaatttaatcacatcaatccgaat 430  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  19789902 tattcattcatctcaagttaatcacatcaatctgaat 19789938  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 40274627 - 40274740
Alignment:
Q  73 cattacactcatgagtcaaatgctcgcttaccccttacatctgatctctcccttcgttggcctacgacaccccttaagagcaaacacaaatcaaaatcat 172  Q
    ||||||| | |||||||||| |||| |||||||||| ||| | ||||| | | ||||||||||| || |||||||||| ||||||||||||||||||||     
T  40274627 cattacatttatgagtcaaacgctcacttaccccttgcatgtaatctccctcctcgttggcctaggataccccttaagggcaaacacaaatcaaaatcaa 40274726  T
Q  173 cactaactcatggt 186  Q
    |||||||| |||||    
T  40274727 cactaacttatggt 40274740  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 34487909 - 34487990
Alignment:
Q  111 atctgatctctcccttcgttggcctacgacaccccttaagagcaaacacaaatcaaaatcatcactaactcatggtttaagg 192  Q
    |||| ||||||||| ||||||||||| || || ||||||||||||| |||||||||||||| ||  || |||||||||||||    
T  34487909 atctaatctctcccctcgttggcctatgatacaccttaagagcaaatacaaatcaaaatcaacaacaattcatggtttaagg 34487990  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 12926276 - 12926228
Alignment:
Q  144 ccttaagagcaaacacaaatcaaaatcatcactaactcatggtttaagg 192  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  12926276 ccttaagagcaaacacaaatcaaaattaacactaactcatggtttaagg 12926228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 12926218 - 12926166
Alignment:
Q  321 aagggtaatcaaagagtattcattcatctcaaattaatcacatcaatttgaatc 374  Q
    ||||| ||||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  12926218 aagggcaatcaaa-agtattcattcatctcaagttaatcacaacaatatgaatc 12926166  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 161579 - 161654
Alignment:
Q  116 atctctcccttcgttggcctacgacaccccttaagagcaaacacaaatcaaaatcatcactaactcatggtttaagg 192  Q
    |||||||||| |||||| ||| || ||  ||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  161579 atctctccct-cgttggtctaggatacaacttaagagcaaacacaaatcaaaattaacaccaactcatggtttaagg 161654  T

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Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 161651 - 161703
Alignment:
Q  321 aagggtaatcaaagagtattcattcatctcaaattaatcacatcaatttgaatc 374  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  161651 aagggtaatcaaa-agtattcattcatctcaagttaatcacaacaatatgaatc 161703  T

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