View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_40 (Length: 251)
Name: NF19189_low_40
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 39581658 - 39581445
Alignment:
| Q |
22 |
aacggcccagaagatttacagcagacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaat |
121 |
Q |
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| T |
39581658 |
aacggcccagaagatttacaccagacacttttaccagagatgtttgagcagccagaaaccgagctgggaag-ataagtaaaggaatctatgaaataaaat |
39581560 |
T |
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| Q |
122 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
221 |
Q |
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| T |
39581559 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
39581460 |
T |
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| Q |
222 |
tagtagggtcattat |
236 |
Q |
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| T |
39581459 |
tagtacggtcattat |
39581445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 44 - 236
Target Start/End: Original strand, 39620323 - 39620515
Alignment:
| Q |
44 |
agacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaatacaagcttggaaggaaaaaggt |
143 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| | |||||||| | ||||| || | |||||||| |
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| T |
39620323 |
agacacttttatcagagatgtttgagaagccagataccgatctgggaagtacaagtaaaggaatcaaagaaataaagcaaaagctgggcaataaaaaggt |
39620422 |
T |
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| Q |
144 |
tctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtagggtcattat |
236 |
Q |
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| T |
39620423 |
tcttttggttcttgatgacgttgataacaaagaacaattaaaaaatttggcaggaggaagtgattggtttggcccaggtagtaggatcattat |
39620515 |
T |
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