View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_41 (Length: 250)
Name: NF19189_low_41
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 48769581 - 48769484
Alignment:
| Q |
4 |
atgtcgaagaatatttcacaagggaatcatgtcatggatattttatcagtattttcgtattaatgtttctttccgaaatttttccatttcttacaatat |
102 |
Q |
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| T |
48769581 |
atgtcgaa-aatatttcacaagggaatcatgtcatggatattttatcagtattttcgtattaatgtttctttccgaaatttttccatttcttacaatat |
48769484 |
T |
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Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 48769488 - 48769403
Alignment:
| Q |
165 |
aatatatagcctgattttgtatttttgtcttccattttttagtgatgtcctccatattttgttatagtattgttctatcgttctct |
250 |
Q |
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| T |
48769488 |
aatatatagcctgattttgtacttttgtcttccattttttagtgatgtcctccatattttgttatagtattgttctatcgttctct |
48769403 |
T |
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