View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_42 (Length: 250)
Name: NF19189_low_42
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 44730906 - 44730664
Alignment:
| Q |
1 |
tgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaatttgagcaaaactgtgattgatt |
100 |
Q |
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| T |
44730906 |
tgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaatttgagcaaaactgtgattgatt |
44730807 |
T |
|
| Q |
101 |
gtgcatttataagctacattcatcatggtttctacaactagttgtgtgtatattctatacatctagcagttatacttgtgcagttatcaatacaatgaaa |
200 |
Q |
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| T |
44730806 |
gtgcaattataagctacattcatcatggtttctacaactagttgtgtgtatattctataaatctagcagttatacttgtgcatttatcaatacaatgaaa |
44730707 |
T |
|
| Q |
201 |
aatattaagaggacatcttatagttcactgttcttctgtgctc |
243 |
Q |
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| T |
44730706 |
aatattaagaggacatcttatagttcactgttcttctgtgctc |
44730664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 16867293 - 16867096
Alignment:
| Q |
1 |
tgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaatttgagcaaaactgtgattgatt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||| |||| ||||||||||||||| | | ||| |||||| | || |
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| T |
16867293 |
tgtggcattgcaatgcaagcatcataccctactgcttaaatgtcaaaattaatacttatgttatctaaactttgtaattcaaactaaattgtgatggttt |
16867194 |
T |
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| Q |
101 |
gtgcatttataagctacattcatcatggtttctacaactagttgtgtgtatattctatacatctagcagttatacttgtgcagttatcaatacaatgaa |
199 |
Q |
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| T |
16867193 |
gtgcatttattagctacattcatcatggtttctaagaccagttgtgtat-tattctatacatctactggatatacttgtgcatttatcaatacaatgaa |
16867096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 30881889 - 30882042
Alignment:
| Q |
1 |
tgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaatttgagcaaaactgtgattgatt |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| | |||||||||| | || |||||||||||||||||||| || |||| |||||||||||| |
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| T |
30881889 |
tgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaattcgatcaaagctgtgattgatt |
30881988 |
T |
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| Q |
101 |
gtgcatt-------tataagctacattcatcatggtttctacaactagttgtgt |
147 |
Q |
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||||||| ||| ||||||||||||||||||||||| |||| |||||| |
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| T |
30881989 |
gtgcatttatcatctattagctacattcatcatggtttctatgactatttgtgt |
30882042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30719470 - 30719394
Alignment:
| Q |
1 |
tgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaa |
77 |
Q |
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||||||||||||||| ||||||||||||||||||||||| | |||||||||| | || |||||||||||| ||||| |
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| T |
30719470 |
tgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactatgtaa |
30719394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8899504 - 8899742
Alignment:
| Q |
1 |
tgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaatttgagcaaaactgtgattgatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| || | | |||||||||||| || |
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| T |
8899504 |
tgtggcattgcaatgcaggcatcttaccctactgcttaaatgccaaacttaatacttatgttacctaaactttgtatttcaacctaaactgtgattgttt |
8899603 |
T |
|
| Q |
101 |
gtgcatttataagctacattcatcatg-------gtttctacaactagttgtgtgtatattctatacatctagcagttatacttgtgcagttatcaatac |
193 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
8899604 |
gtgcatttatcagctacattcatcatggtttctagtttctacaactagt--tgtgtatattctatacatctacatgttatacttgtgcatttatcaatac |
8899701 |
T |
|
| Q |
194 |
aatgaaaaatattaagaggacatcttatagttcactgttctt |
235 |
Q |
| |
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|||| || |||||||||| | |||||| ||||||| ||||| |
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| T |
8899702 |
aatg-aagatattaagagtaaatcttactgttcacttttctt |
8899742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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