View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_43 (Length: 250)
Name: NF19189_low_43
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14282029 - 14281789
Alignment:
| Q |
1 |
tatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggag |
100 |
Q |
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| T |
14282029 |
tatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtggtggtgatgtagctgtggag |
14281930 |
T |
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| Q |
101 |
ataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtag |
200 |
Q |
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| T |
14281929 |
ataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtag |
14281830 |
T |
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| Q |
201 |
gaacagttggatcaggcaagtcttcattattggcttctgtg |
241 |
Q |
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| T |
14281829 |
gaacagttggatcgggcaagtcttcattattggcttctgtg |
14281789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 14320177 - 14319938
Alignment:
| Q |
2 |
atatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggaga |
101 |
Q |
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| T |
14320177 |
atatctttagggaggttggatgagttcatggtgagtaaggaaatggatgagaatgcagtgcaaagagaggagaattgtgatggtgatgtagccgtggaga |
14320078 |
T |
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| Q |
102 |
taaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtagg |
201 |
Q |
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| T |
14320077 |
taaaagatgggaaattttcatgggatgataaggatgagaatgaggcgttgacagtggaagagttggtaattaagaaaggggaccgtgctgctattgtagg |
14319978 |
T |
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| Q |
202 |
aacagttggatcaggcaagtcttcattattggcttctgtg |
241 |
Q |
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| T |
14319977 |
aactgttggttcaggcaagtcttcattattggcttctgtg |
14319938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 14303786 - 14303547
Alignment:
| Q |
2 |
atatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggaga |
101 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
14303786 |
atatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaatgcagtgcaaagagaggagaactgtaatggtgatgtagctgtggaga |
14303687 |
T |
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| Q |
102 |
taaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtagg |
201 |
Q |
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| T |
14303686 |
taaaagatgggaaattttcttgggatgatatggatgagaatgaggctttgcgagttaaggaattggtgattaagaaaggggaccatgctgctgttgtagg |
14303587 |
T |
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| Q |
202 |
aacagttggatcaggcaagtcttcattattggcttctgtg |
241 |
Q |
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||| |||||||||||||||||||||||| ||||||||||| |
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| T |
14303586 |
aactgttggatcaggcaagtcttcattactggcttctgtg |
14303547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 25884859 - 25884620
Alignment:
| Q |
2 |
atatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggaga |
101 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||| |||| |||| ||||| |||||||||||||||||||| |
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| T |
25884859 |
atatctttagggaggttggatgagttcatgacgagtaaggaaatggatgagaatgcagtgcaacgagaggagaattgtgatggtgatgtagctgtggaga |
25884760 |
T |
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| Q |
102 |
taaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtagg |
201 |
Q |
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|||||||||||||||| || |||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
25884759 |
taaaagatgggaaattctcatgggatgataacgatgagaacgacgctctgagagttgaagagttggtaattaagaaaggggatcatgctgctgttgtagg |
25884660 |
T |
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| Q |
202 |
aacagttggatcaggcaagtcttcattattggcttctgtg |
241 |
Q |
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||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
25884659 |
aactgttggttcagggaagtcttcattattggcttctgtg |
25884620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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