View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_44 (Length: 249)
Name: NF19189_low_44
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_44 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 100648 - 100412
Alignment:
| Q |
1 |
ttcatttcatttatagaagcctcattcattagaccataatcacgaacattagacgagcacacatgacaacattcgtttagaccataatcatgaatattcg |
100 |
Q |
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| T |
100648 |
ttcatttcatttatagaagcctcattcatttgaccataatcacgaacattagacgagcacacatgacaacattcgtttagaccataatcacgaacattcg |
100549 |
T |
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| Q |
101 |
atatacaattccaattgaactagcaaagtatattttttaaccttattttttgttcaacgcacaatgtcttgccgcatcctgtgaatatataatgtaagag |
200 |
Q |
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| T |
100548 |
atatacaattccaattgaactagcaaagtatattttttaacccttttttttgttcaacgcacaatgtcttgccgaatcttgtgaatatttaatgtaagag |
100449 |
T |
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| Q |
201 |
taacttggtgagcaaggaaaggtgggtgggcctattc |
237 |
Q |
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| T |
100448 |
taacttggtgagcaaggaaaggtgggtgggcctattc |
100412 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 10266985 - 10267026
Alignment:
| Q |
9 |
atttatagaagcctcattcattagaccataatcacgaacatt |
50 |
Q |
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| T |
10266985 |
atttatagaagcctcattcattagaccacaatcacgaacatt |
10267026 |
T |
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