View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_49 (Length: 241)
Name: NF19189_low_49
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 2591097 - 2591316
Alignment:
| Q |
6 |
gtgagatgaacagaaatatagatagaaaataaagtgttgaataggtgtataaaagttaaagggtgttcaaatataaaatttgaatttttaaatattgatt |
105 |
Q |
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| T |
2591097 |
gtgatatgaagagacaaatagaaagaaaataaagtgtcgaataagtgtataaa-gttaaaggtagttcaaatataaaagttgaacttttaaatagtgatt |
2591195 |
T |
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| Q |
106 |
acagagtgaactttcatgataatatcatgagttctcaatggacgacgacataaaactattttacattaatagtgtgcatccatattaaattctattttta |
205 |
Q |
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| T |
2591196 |
acagggaaagcttacatgataatatcatgagttctcaatggatgacgatgtaaaactattttacattaataatgtgcatctctattaaattcatttttca |
2591295 |
T |
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| Q |
206 |
acacttacacaggtaagatct |
226 |
Q |
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||||||||||||||||||||| |
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| T |
2591296 |
acacttacacaggtaagatct |
2591316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 2622761 - 2622862
Alignment:
| Q |
125 |
taatatcatgagttctcaatggacgacgacataaaactattttacattaatagtgtgcatccatattaaattctatttttaacacttacacaggtaagat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622761 |
taatatcatgagttctcaatggacgacgacataaaactattttatattaatagtgtgcatccatattaaattctatttttaacacttacacaggtaagat |
2622860 |
T |
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| Q |
225 |
ct |
226 |
Q |
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|| |
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| T |
2622861 |
ct |
2622862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 2622699 - 2622760
Alignment:
| Q |
17 |
agaaatatagatagaaaataaagtgttgaataggtgtataaaagttaaagggtgttcaaatat |
79 |
Q |
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| T |
2622699 |
agaaatatagatagaaaagaaagtgttgaataggtgtat-aaagttaaagggtgttcaaatat |
2622760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 2673419 - 2673373
Alignment:
| Q |
150 |
acgacataaaactattttacattaatagtgtgcatccatattaaatt |
196 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
2673419 |
acgacatataactattttacattaatagtgtgcatccccattaaatt |
2673373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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