View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_5 (Length: 452)
Name: NF19189_low_5
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 37932802 - 37932462
Alignment:
| Q |
17 |
aaaaattgtactgacaatttctggtgttacaacaaatagttttataaactatatccttcgataaattcgtttgatgtttaggtcttctacaaacttcttt |
116 |
Q |
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| T |
37932802 |
aaaaattgtactgacaatttctggtgttacaacaaatagttttataaactatatccttcgataaattcgtttgatgtttaggtcttctacaaacttcttt |
37932703 |
T |
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| Q |
117 |
tgctcagagccttcacccccaatcatcaatgtaaaaataaataaatacaaacttcttttgtccacagccagatccattgtatcaatacccttatgactaa |
216 |
Q |
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| T |
37932702 |
tgctcagagccttcacccccaatcatcaatgtaaaaataaataaatacaaacttcttttgtccacagccagatccattgtatcaatacccttatggctaa |
37932603 |
T |
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| Q |
217 |
tctagatcattgatcgtcaagttttgttaagaatgacaagtattatgctggaataaatttattataagatgggtttccattctcttataccaaaatatta |
316 |
Q |
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| T |
37932602 |
tctagatcattgatcgtcaagttttgttaagaatgacaagtatcatgctggaataaatttattataagatgggtttccattctcttataccaaaatatta |
37932503 |
T |
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| Q |
317 |
atcacatgttgagccagaacggttgttttaggcctcatctt |
357 |
Q |
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| T |
37932502 |
atcacatgttgagccaaaacggttgttttaggcctcatctt |
37932462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 37932421 - 37932359
Alignment:
| Q |
390 |
cattttataattaaagactttgattacaaatgaaaaatctatgtataaacccaccactcaagt |
452 |
Q |
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| T |
37932421 |
cattttataattaaagactttgattacaaatgacaaatctatgtataaacccaccattcaagt |
37932359 |
T |
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