View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_50 (Length: 238)
Name: NF19189_low_50
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44730966 - 44731186
Alignment:
| Q |
1 |
cagttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44730966 |
cagttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatga |
44731065 |
T |
|
| Q |
101 |
accactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgccacagctttttgcagtgcctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
44731066 |
accactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgcgacagctttttgcaatgcctgc |
44731165 |
T |
|
| Q |
201 |
tcattgttggcagggacatct |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
44731166 |
tcattgttggcagggacatct |
44731186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30719530 - 30719750
Alignment:
| Q |
1 |
cagttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||||||||| |
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| T |
30719530 |
cagttccccatgaattcttaaccaaccaatacttggttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatga |
30719629 |
T |
|
| Q |
101 |
accactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgccacagctttttgcagtgcctgc |
200 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||| |||||||||||| |
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| T |
30719630 |
accagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgc |
30719729 |
T |
|
| Q |
201 |
tcattgttggcagggacatct |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
30719730 |
tcattgttggcagggacatct |
30719750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30881829 - 30881609
Alignment:
| Q |
1 |
cagttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||||||||| |
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| T |
30881829 |
cagttccccatgaattcttaaccaaccaatacttggttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatga |
30881730 |
T |
|
| Q |
101 |
accactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgccacagctttttgcagtgcctgc |
200 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
30881729 |
accagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgc |
30881630 |
T |
|
| Q |
201 |
tcattgttggcagggacatct |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
30881629 |
tcattgttggcagggacatct |
30881609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 16867355 - 16867573
Alignment:
| Q |
3 |
gttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatgaac |
102 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |
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| T |
16867355 |
gttccccaagagtttttaaccaaccaatacttagttccatcattactaacaccataacccacggcggtaacaccatgatccaactcagttccgcatgaac |
16867454 |
T |
|
| Q |
103 |
cactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgccacagctttttgcagtgcctgctc |
202 |
Q |
| |
|
|| ||||||| || |||||||| ||||||||||| || ||||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| |
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|
| T |
16867455 |
cagtaaagacgccacttttgtagaattgaaagtcggaaccactagcatcaatggctacggaaatcggttgattagccactgctttttgtagtgcctgctc |
16867554 |
T |
|
| Q |
203 |
attgttggcagggacatct |
221 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
16867555 |
attgttggtcgggacatct |
16867573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 30892909 - 30892692
Alignment:
| Q |
4 |
ttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatgaacc |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||||||||||| || ||||||||||| |
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|
| T |
30892909 |
ttccccatgaattcttaaccaaccaatacttggttccatcattactaatgccataacccacagcagtaacaccatgatccaactgagtaccacatgaacc |
30892810 |
T |
|
| Q |
104 |
actaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgccacagctttttgcagtgcctgctca |
203 |
Q |
| |
|
| | |||||||| |||||||||||||| || || || ||||| ||||||||||| || ||||| |||||||| ||||| |||||||||||||| | |||| |
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|
| T |
30892809 |
agtgaagacaccacttttgtaaaattggaaatcggagccactcgcatcaatggctacggaaattggttgattagccactgctttttgcagtgcattctca |
30892710 |
T |
|
| Q |
204 |
ttgttggcagggacatct |
221 |
Q |
| |
|
||||| || ||||||||| |
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| T |
30892709 |
ttgtttgccgggacatct |
30892692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8899444 - 8899224
Alignment:
| Q |
1 |
cagttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||| ||||||||||| ||||| ||||| |
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|
| T |
8899444 |
cagttccccatgagttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatga |
8899345 |
T |
|
| Q |
101 |
accactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgccacagctttttgcagtgcctgc |
200 |
Q |
| |
|
||| |||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||| |||||||||||||| ||| |
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|
| T |
8899344 |
accggtaaatacaccacttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgc |
8899245 |
T |
|
| Q |
201 |
tcattgttggcagggacatct |
221 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
8899244 |
tcattgttggcaggaacatct |
8899224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 31727601 - 31727399
Alignment:
| Q |
2 |
agttccccatgagttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatgaa |
101 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| || |||| | ||| ||||||||||| ||| | | ||||||||||||||||| |||||||||||| |
|
|
| T |
31727601 |
agttccccatgaattcttcaccaaccaatactcagtctcatcttcaccaacaccataacctacaacagctacaccatgatccaactcagttccacatgaa |
31727502 |
T |
|
| Q |
102 |
ccactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgccacagctttttgcagtgcctgct |
201 |
Q |
| |
|
||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||||| || |||| |||||||| || || |||||||||| |||||||| |
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|
| T |
31727501 |
ccagtaaatacaccacttttgtaaaattggaagtcagagccactagcatcaatggccaccgaaaccggttgattagctacggctttttgcaatgcctgct |
31727402 |
T |
|
| Q |
202 |
cat |
204 |
Q |
| |
|
||| |
|
|
| T |
31727401 |
cat |
31727399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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